Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02297 ATGCGGGGGCACTTGACAGCAAGGAGTGATGTATACAGTTTTGGTGTTGTTCTTCTGGAGCTTTTGACAGGAAGAAAGTCTGTTGACAAGACAAAACCAAGCAAGGAGCAAAATTTGGTAGATTGGGCCCGACCTAAACTAAATGACAAGAGGAAGTTGCTACAAATAATTGACCCTAGATTGGAAAGTCAATACTCGATAAGGGCAGCACAGAAGGCCTGCAGCCTAGCGTACTATTGCCTGAGCCAAAATCCAAAAGCAAGACCATTAATGAGCGATGTAGTTGAAACTCTGGAACCACTGCAGAGCGGAACCGATGCAATTGAATATTCATCAACGGGAACTAGTCCATTTGTTAGGGGGGGCGTCCCTGATTACAGGATGCGGCAAAGGTTTATCGACAATGTTGGTTCGGGGGCTAGTTGCCGGTCTCCTAACCCCAACTGTTCCCCGAGCGGCCCTGCTGCATGTAGGGCTTCAGCAGGATCTAATATCTTTCTTGCATGTTATTCATGTATATGTGATTTTGGGATTTTAAGTATCATCTCCGTTGACGAGAGGAAAACCATTATCCATTTCCCACTCTTTTCGGCCAAGAAGGAACTTTTGAACGGCCGTTGGAAAGGAAGTAGCATCTCCATTTTGAAGTTGTCCCCGTCGATGACCAAAGGGAAAAGGTGTCGGATGGTTGATTGGCTTTTAAGACAAGCGAAATCATTTAGTAGAAGCAAAAAGAAAAAAGAATATGAGGCCGACTCTTTCTTCCTTCTATCCAGGTCTATTTTTGGCCAAGCCATGACCAATTCAACATCATATCGACATACCCGTGCTGTTGCTGCCGCGAACTCGGAAACTGTGGCCATGTCAGCTGTGCGAACGCTGCTACTTTTCGCTTTCTTCTACGCTGGAATCGATACAACCGGTTCTTTTACTGATCCCCGCGATTCTGTGGCGCTGGAATCCCTGAAAAGCGAATGGCAAAATACACCACCAAGCTGGGGAGTATCAAATGATCCGTGTGGAACTCCCTGGGAAGGAGTGGCTTGCATAAATTCAAGAGTCACTGCACTGCGATTATCAACTATGGGCCTGAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGACCGAACTAAAATCATTGGACCTTTCGTTCAATAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACAGAGTTTGAGTATCTTGATCCTGGCTGGGTGTGGCTTCAGTGGCAGTATTCCTGAACAACTGGGCAATCTTTCTAATCTATCCTTCTTGGCTTTAAACTCTAACAACTTCACTGGTTCCATACCGCCATCTCTGGGAAAACTCTCCAATCTCTATTGGTTGGACCTAGCAGATAATCAGCTGACAGGTAGTCTCCCTGTCTCGACTTCCGAATCTTCTGGTTTGGACCTCCTTCTGAAGGCTAAACACTTTCATTTCAACAAAAACCAGTTGTCAGGTCCCATTTCACCTAAACTTTTTAGCTCTGAAATGGTATTAATACACATATTATTTGATGGAAATAAATTTTCTGGGAATATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGGAATTCTCTGACAGGAACTGTCCCATCAAATCTGAACAACCTAACAAATATCAATGAATTGAATTTAGCCAACAATAAGTTGACGGGTCCACTGCCAAACTTAACTCAAATGAGCTCACTAAATTACGTGGACCTTAGTAACAACTCATTTGATTCATCGGAAGCTCCAGAATGGTTCTCAAATCTACAATCTCTCACCACTCTGATCGTTGAATTTGGGTCAATGAGAGGATCTGTGCCACAAGGAGTGTTTAGCTTACCGCAAATACAACAAATAAAATTGAAGAAGAATGCATTTAGTGACACATTTGATATGGGTGACAAAGTCAGCGAACAGTTGCAGCTTGTTGATTTGCAAAATAACAATATTTCCCATTTTACCCTTGGTTCAAGATATACCAAAACTTTGATGCTTATAGGGAATCCTGTGTGTAGCACTGATGCTACCCTCTCAAATACGAACTACTGCCAAGTTCAAAATCAACCGGTGAAACCCTATTCTACCAGCCTTGCCAGCTGTTTAAGTAAGTCATGTTCTCCAGATGAGAAGTTAAGTCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGAATTGTCCAATGTGACTTTGTTTCATTCTTTGGAAATGAGCCTTTGGAAAAAACTGGACCTTACGCCCGGTTCAGTATCTATTCAAAACCCTTTCTTCAATGTTGATGATTATCTTCAAATGCAACTTGCACTTTTTCCACCAGACGGAAAGTATTTTAATAGGTCAGATATTCAAAGGATTGGGTTTGACTTGAGCAATCAAACCTACAAACCTCCCCCAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTATGGTTTCGCAGCGGTTATATCTTATCATAGTGATGATGAACTGATCCTAAAAGCATTAATGCTTCAAGGCACGGCTAGGGGAACTTCAATCAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCGTTCTAGGCCTCATTGGAGTTGGAATATATGCAATTCGGCAAAAGAAACGTGCAGAAAAGGCCATAGGGATGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGCAATGATAGTGGGGGTGCACCACAATTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAGTAATTTCTCCATGAGCAATGAGGTAGGATCTGGAGGATATGGCAAGGTATATAGAGGAATGCTTGTGGATGGACAAGCAGTAGCGATCAAAAGAGCTCAGCAAGGATCAATGCAGGGTGGCCTTGAGTTCAAGACGGAAATCGAATTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGAACACTGAGAGATAGCCTATCTGGAAAATCTGGTATCAATCTTGATTGGAAGAGAAGACTTCGTATTGCACTCGGGTCTGCCAGAGGATTGACTTACTTGCATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAATATTTTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGGTTATTTGGATCCTGAATATTACATGACTCAACAACTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTATGTTGGAATTATTAACGGCTAAGCTGCCTATCGAGAAAGGAAAGTATGTAGTGCGTGAGGTGCGCATGTTGATGAATAAAAGTGAAGAGGAATATTATGGTCTGAAGCAGATAATGGATGTAACCATAATAAATAATACAACGACCATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCAATGCGTTGAAGAATCAGCTATAGATCGTCCCACAATGAGTGAAGTGGTCAAGGCAATTGAGAGCATTTTGCAGAATGATGGAATTAATACGAACACAACATCTGCATCCTCGTCTGCAACTGACTTTGGGGCTTCCAGAACCGCGCCTAGGCATCCCTATAATGATCCTATACCCAAAAAGGATGCTAATGACAGCAATGCTTTTGATTACAGCGGTGGATACACTCTTTCGACAAAAGTGGAGCCCAAATAG 3768 42.7 MRGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLESQYSIRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSGTDAIEYSSTGTSPFVRGGVPDYRMRQRFIDNVGSGASCRSPNPNCSPSGPAACRASAGSNIFLACYSCICDFGILSIISVDERKTIIHFPLFSAKKELLNGRWKGSSISILKLSPSMTKGKRCRMVDWLLRQAKSFSRSKKKKEYEADSFFLLSRSIFGQAMTNSTSYRHTRAVAAANSETVAMSAVRTLLLFAFFYAGIDTTGSFTDPRDSVALESLKSEWQNTPPSWGVSNDPCGTPWEGVACINSRVTALRLSTMGLKGKLGGDIGGLTELKSLDLSFNKDLTGSISPALGDLQSLSILILAGCGFSGSIPEQLGNLSNLSFLALNSNNFTGSIPPSLGKLSNLYWLDLADNQLTGSLPVSTSESSGLDLLLKAKHFHFNKNQLSGPISPKLFSSEMVLIHILFDGNKFSGNIPPTLGLVKTLEVLRLDRNSLTGTVPSNLNNLTNINELNLANNKLTGPLPNLTQMSSLNYVDLSNNSFDSSEAPEWFSNLQSLTTLIVEFGSMRGSVPQGVFSLPQIQQIKLKKNAFSDTFDMGDKVSEQLQLVDLQNNNISHFTLGSRYTKTLMLIGNPVCSTDATLSNTNYCQVQNQPVKPYSTSLASCLSKSCSPDEKLSPQSCECAYPFEGTLYFRAPSFRELSNVTLFHSLEMSLWKKLDLTPGSVSIQNPFFNVDDYLQMQLALFPPDGKYFNRSDIQRIGFDLSNQTYKPPPEFGPFYFIASPYGFAAVISYHSDDELILKALMLQGTARGTSISPGVIIGVAIGCAFLVLGLIGVGIYAIRQKKRAEKAIGMSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTSNFSMSNEVGSGGYGKVYRGMLVDGQAVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKSEEEYYGLKQIMDVTIINNTTTIIGLGRFLELAMQCVEESAIDRPTMSEVVKAIESILQNDGINTNTTSASSSATDFGASRTAPRHPYNDPIPKKDANDSNAFDYSGGYTLSTKVEPK 1255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33825145 33844030 + Lsi03G022970.1 Lsi03g02297 660047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02297 1255 ProSitePatterns Protein kinases ATP-binding region signature. 943 965 IPR017441 GO:0005524
Lsi03g02297 1255 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02297 1255 SUPERFAMILY Protein kinase-like (PK-like) 3 97 IPR011009 -
Lsi03g02297 1255 MobiDBLite consensus disorder prediction 1201 1240 - -
Lsi03g02297 1255 Pfam Protein tyrosine and serine/threonine kinase 4 98 IPR001245 GO:0004672|GO:0006468
Lsi03g02297 1255 Pfam Protein tyrosine and serine/threonine kinase 939 1190 IPR001245 GO:0004672|GO:0006468
Lsi03g02297 1255 SUPERFAMILY Protein kinase-like (PK-like) 922 1204 IPR011009 -
Lsi03g02297 1255 Gene3D Ribonuclease Inhibitor 474 692 IPR032675 -
Lsi03g02297 1255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1057 1069 IPR008271 GO:0004672|GO:0006468
Lsi03g02297 1255 PANTHER LRR RECEPTOR-LIKE KINASE 4 116 - -
Lsi03g02297 1255 PANTHER LRR RECEPTOR-LIKE KINASE 288 1227 - -
Lsi03g02297 1255 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 116 - -
Lsi03g02297 1255 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 288 1227 - -
Lsi03g02297 1255 MobiDBLite consensus disorder prediction 1201 1216 - -
Lsi03g02297 1255 CDD STKc_IRAK 943 1194 - -
Lsi03g02297 1255 Gene3D Phosphorylase Kinase; domain 1 911 1012 - -
Lsi03g02297 1255 ProSiteProfiles Protein kinase domain profile. 937 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02297 1255 Gene3D Ribonuclease Inhibitor 314 473 IPR032675 -
Lsi03g02297 1255 Gene3D Transferase(Phosphotransferase) domain 1 1 113 - -
Lsi03g02297 1255 Gene3D Transferase(Phosphotransferase) domain 1 1013 1217 - -
Lsi03g02297 1255 SUPERFAMILY L domain-like 322 698 - -
Lsi03g02297 1255 SMART serkin_6 937 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01202 Lsi-Chr2:15336317 Lsi03g02297 Lsi-Chr3:33825145 3.88E-16 dispersed
Lsi03g01283 Lsi-Chr3:23660770 Lsi03g02297 Lsi-Chr3:33825145 3.73E-07 dispersed
Lsi03g02297 Lsi-Chr3:33825145 Lsi10g00794 Lsi-Chr10:10747100 0 dispersed
Lsi03g02297 Lsi-Chr3:33825145 Lsi10g01334 Lsi-Chr10:17550759 4.80E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83544 PF07714 PK_Tyr_Ser-Thr 8.50E-39 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02297 - - csv:101220026 1744.55