Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00009 ATGGGCCCCGAAGAAGCCGAACGTTTTTGGTCTGCCTTTGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGAACTCAGAGAGTTCACATCAGGGATCTGAGAACAACAGCTTCACTTTATGCCACATATTGAGAATTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCAGACTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAAGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAGTTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCTGCTGTTGCTTACCGTGTTTATATTTGTCCAGTTAAGAAAGGTGTAAAAGGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAGGGAAGTCATGGAGAAGGCAAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAACAGTAAAAGCCTGGAGAATATTGACACTGGGGGTTTGATATACTTTGAAGGCTTAATGGAGAAATCATCTCTTTCATCCAGTTTAGAAATTCTTGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAGCGAGTATTTGTTAATGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAATGGGTGGCATCAAGAGGAAGTTTGACTCAATGTGCTCACCTGCAAGGACAATAACCAGTTCAATGTCTCCAATTTGCTCTCCTGCTTCGCATGCCAATGCCACTCTTAATAGTGGTAACGCCAAACTTGCTGCCACGCCTGTTAGCACAGCCATGACAACGGCAAAGTGGCTCAGAACTGTTATTTCCCCACTTCCAGCGAAACCTTCAGCAGAAATGGAGCGCTTTTTGGCTTCATGTGATAGGGATGTAACTAATGATGTAGTCCACAGGGCGCATATTATACTGGAGGCCATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTGTAGCTGGAAATTTTCAAAGTGCAAATCTCATGGATAATATCTGGGCAGAACAGCGACGACTAGAAGCATTGAAGTTATACTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCTGAATTGGTTTTGGCAACTCATAAAACTGTTACAATGTTGTTTCCTGCAGTATTGGAAAGAACTGGTATAACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATCAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCTTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAATCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCCATTGCTGTACAAATTAACTTTTCTGGTATTGGGGTATCAACCATGCCTAATTTGCAAAAGCATGAGAGTTTTCCAGGTCAGAATGGGGATATAAGGTCACCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGACTCATGGCTTTCAGTAGTATTAAGTCTAAGCTTCTGCCCCCTCCTTTACAGTCGGCTTTTGCAAGTCCTACTCGGCCTAACCCTGGAGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATTTTCTTTAGCAAGATCATCAAGTTGGCTGCTGTAAGAGTCAACGGTATGGTGGAAAGATTGCAGTTATCCCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGACATCACTATTATTTAATCGTCACATCGACCAGACCATCCTATGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATATACAACTACAGGAAGCAACCACAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGACTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACCTTCTACAATGAAATATTTATTCCTTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCGACTGGATCAACCATGAAAACTGACAGGGTTCCTCAAGTCAACAACAACAGCGATGCACCGTGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGCCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTACGTCTCTCCATTAAGTACGCGGAAACTCCGGGGCACACTAAATTTTGACGACGCGGACGTTGGTTTAGTCAGTGATTCCCTGGTGGCCAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGCTGTGATAATCTTATTACGGGTTACAAGCAAATGTGCCAATGATTTAGGCAAGATGATTCGGACTATGGACATTGCACTGATGCCTTCCACGTCTTGA 2652 42.53 MGPEEAERFWSAFVLYSVKRLRDKNSESSHQGSENNSFTLCHILRICKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQSAISCPAVAYRVYICPVKKGVKGVDLLGSLCNVYDTSEEELREVMEKANSLIEDILKKKPRLASECNSKSLENIDTGGLIYFEGLMEKSSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKFDSMCSPARTITSSMSPICSPASHANATLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVHRAHIILEAIFPNSALGERCVAGNFQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMPNLQKHESFPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIIKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKTSLLFNRHIDQTILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPTGSTMKTDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLSTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSAVIILLRVTSKCANDLGKMIRTMDIALMPSTS 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 144056 153011 + Lsi04G000090.1 Lsi04g00009 660058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00009 883 Coils Coil 152 176 - -
Lsi04g00009 883 MobiDBLite consensus disorder prediction 766 798 - -
Lsi04g00009 883 Gene3D - 303 491 - -
Lsi04g00009 883 SMART DUF3452_2 21 154 IPR024599 -
Lsi04g00009 883 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 4 123 IPR028309 GO:0006357|GO:0051726
Lsi04g00009 883 SMART RB_A_2 300 501 IPR002720 GO:0005634|GO:0051726
Lsi04g00009 883 Pfam Retinoblastoma-associated protein A domain 300 501 IPR002720 GO:0005634|GO:0051726
Lsi04g00009 883 SUPERFAMILY Cyclin-like 623 792 IPR036915 -
Lsi04g00009 883 Coils Coil 206 233 - -
Lsi04g00009 883 Pfam Domain of unknown function (DUF3452) 31 125 IPR024599 -
Lsi04g00009 883 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 135 817 IPR028309 GO:0006357|GO:0051726
Lsi04g00009 883 MobiDBLite consensus disorder prediction 766 782 - -
Lsi04g00009 883 Gene3D - 585 778 - -
Lsi04g00009 883 SUPERFAMILY Cyclin-like 308 503 IPR036915 -
Lsi04g00009 883 Pfam Retinoblastoma-associated protein B domain 625 752 IPR002719 GO:0005634|GO:0051726
Lsi04g00009 883 PANTHER BNACNNG22930D PROTEIN 4 123 - -
Lsi04g00009 883 PANTHER BNACNNG22930D PROTEIN 135 817 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25095 PF01858 RB_A 3.70E-64 CL0065 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00009 K04681 - csv:101219810 1537.32