Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00016 ATGTCTAAAAAGATTGTGGCTAACATCCTGGTGATGAGCTTGGTAGTTCTTACTAATTCCATTGATGTCCTGGTGAGTGGACCAGGCAAGTTGAGAAAGAAACGAGAAGAAAGTGGCAAGCGGGATGCCAGTATTACAGAGAACCTCAAAGTATATGCCATGACTGATATCAGTCCAAGGACTGATATTTCTACTGATGTTGACACCGATGACAAAAACCAGAGGCTCGATATGCTTCAACGGAATGTTGTGGCTTCTGATTCTAGTGATAGAACAAAAGATAAGTCTGACCAGAAGACTCTACGTAGGCTTGCACAAAATCGTGAAGCTGCCAGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTGAACTCTCATGCAAGTGATACTGAACTTCGAATGATTGTCGATGGCATCTTGGCTCACTATGATGAGGTTTTTCGGCTAAAGAGCATCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCCTAAAGCTTCTAGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGGTGGGCATATCCAACTTGCAGCAGTCCTCCCAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCATTGCAACAATCGTTGGCTGAGACGTTATCCAGTGGATCTCTTGGCTCCTCGAATACGTCTGGCAATGTGGCAAATTATATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACCCTTGAGGGGTTTATTCGCCAGGCTAACAATCTACGGCAACAAACACTGCAACAAATGCATCGGATTTTGACAACTCGTCAGTCGGCTCGTGCACTTCTTGCAATTCATGATTACTTCTCTAGACTACGAGCCCTTAGTTCCCTCTGGCTTGCTCGCCCAAAAGAGTGA 1155 45.89 MSKKIVANILVMSLVVLTNSIDVLVSGPGKLRKKREESGKRDASITENLKVYAMTDISPRTDISTDVDTDDKNQRLDMLQRNVVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGILAHYDEVFRLKSIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKLGTLEGFIRQANNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 217909 225384 - Lsi04G000160.1 Lsi04g00016 660065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00016 384 Pfam Basic region leucine zipper 95 141 IPR004827 GO:0003700|GO:0006355
Lsi04g00016 384 SMART brlzneu 95 158 IPR004827 GO:0003700|GO:0006355
Lsi04g00016 384 SUPERFAMILY Leucine zipper domain 99 142 IPR046347 GO:0003700|GO:0006355
Lsi04g00016 384 ProSiteProfiles DOG1 domain profile. 164 381 IPR025422 GO:0006351|GO:0043565
Lsi04g00016 384 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 40 384 - -
Lsi04g00016 384 Gene3D - 98 150 - -
Lsi04g00016 384 PANTHER TRANSCRIPTION FACTOR TGA9 40 384 - -
Lsi04g00016 384 Coils Coil 118 145 - -
Lsi04g00016 384 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 102 117 IPR004827 GO:0003700|GO:0006355
Lsi04g00016 384 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 97 141 IPR004827 GO:0003700|GO:0006355
Lsi04g00016 384 Coils Coil 175 195 - -
Lsi04g00016 384 Pfam Seed dormancy control 181 256 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00118 Lsi-Chr3:1664079 Lsi04g00016 Lsi-Chr4:217909 3.51E-13 dispersed
Lsi03g00453 Lsi-Chr3:5134947 Lsi04g00016 Lsi-Chr4:217909 1.11E-71 dispersed
Lsi03g01615 Lsi-Chr3:27278710 Lsi04g00016 Lsi-Chr4:217909 0 dispersed
Lsi03g01716 Lsi-Chr3:28531305 Lsi04g00016 Lsi-Chr4:217909 1.74E-127 dispersed
Lsi04g00016 Lsi-Chr4:217909 Lsi08g00928 Lsi-Chr8:17665259 0 dispersed
Lsi04g00016 Lsi-Chr4:217909 Lsi10g01166 Lsi-Chr10:15933908 1.05E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25096 PF14144 DOG1 3.90E-33 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00016 K14431 - csv:101216885 588.956