Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00033 | ATGAGTTTGGATTCATTTTTTCCGGAGATGTCACTCAAGTTACACCATATTGATCTAAAGGGAGGTTCAGGTACCCAGAAAAGGCTGAAGGATCTCTCGTCTCAGTCTGCCAATAAGTACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGTTAGATGATTGGACAGACGAACAAGTTGATGCTTTGACGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCTTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTTACAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCGCTTCCAGTACTGATGCAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAAGAATTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCGATGGCAGGTATGATTGAATTCGTTGGTTTAATTAAGGTCAACGTGGTCAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGCGATCCGTACGTAATTCTCTCGTTGGGCCAGCAATCAGTGAAGACACGAGTTATAAAGAGCAGTTTGAATCCAGTCTGGAACGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCCGAAATCGACATCAATCCACTGCTCACCGCGGCCCGAGCCTGTGAGAGGTCCACAATCAGTGAACCAATGCAGCTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAACGGGGTGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG | 1149 | 43.69 | MSLDSFFPEMSLKLHHIDLKGGSGTQKRLKDLSSQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALTSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRKKYELLQFTSLDDQFFCPFPPPQKRNSSLSHSASSTDANLERRNYEKLPTKTRIGSAFRNSWGRKDSEHKNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGQQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 476752 | 483673 | - | Lsi04G000330.1 | Lsi04g00033 | 660082 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00033 | 382 | SMART | C2_3c | 227 | 322 | IPR000008 | - | |
Lsi04g00033 | 382 | SMART | arf_gap_3 | 26 | 148 | IPR001164 | GO:0005096 | |
Lsi04g00033 | 382 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 26 | 140 | IPR037278 | - | |
Lsi04g00033 | 382 | CDD | C2_ArfGAP | 225 | 369 | - | - | |
Lsi04g00033 | 382 | PRINTS | HIV Rev interacting protein signature | 57 | 74 | IPR001164 | GO:0005096 | |
Lsi04g00033 | 382 | PRINTS | HIV Rev interacting protein signature | 78 | 99 | IPR001164 | GO:0005096 | |
Lsi04g00033 | 382 | PRINTS | HIV Rev interacting protein signature | 38 | 57 | IPR001164 | GO:0005096 | |
Lsi04g00033 | 382 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED | 16 | 382 | - | - | |
Lsi04g00033 | 382 | Pfam | Putative GTPase activating protein for Arf | 27 | 141 | IPR001164 | GO:0005096 | |
Lsi04g00033 | 382 | CDD | ArfGap | 29 | 135 | - | - | |
Lsi04g00033 | 382 | ProSiteProfiles | C2 domain profile. | 208 | 324 | IPR000008 | - | |
Lsi04g00033 | 382 | Gene3D | C2 domain | 225 | 379 | IPR035892 | - | |
Lsi04g00033 | 382 | Pfam | C2 domain | 227 | 317 | IPR000008 | - | |
Lsi04g00033 | 382 | Gene3D | Arf GTPase activating protein | 14 | 147 | IPR038508 | - | |
Lsi04g00033 | 382 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 225 | 319 | IPR035892 | - | |
Lsi04g00033 | 382 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 26 | 141 | IPR001164 | GO:0005096 | |
Lsi04g00033 | 382 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 16 | 382 | IPR044518 | GO:0005096|GO:0005543 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00033 | Lsi-Chr4:476752 | Lsi09g00817 | Lsi-Chr9:9387587 | 1.53E-179 | dispersed | |
Lsi04g00033 | Lsi-Chr4:476752 | Lsi02g00943 | Lsi-Chr2:9334771 | 7.08E-113 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00033 | K12486 | - | csv:101221541 | 722.62 |