Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00033 ATGAGTTTGGATTCATTTTTTCCGGAGATGTCACTCAAGTTACACCATATTGATCTAAAGGGAGGTTCAGGTACCCAGAAAAGGCTGAAGGATCTCTCGTCTCAGTCTGCCAATAAGTACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGTTAGATGATTGGACAGACGAACAAGTTGATGCTTTGACGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCTTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTTACAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCGCTTCCAGTACTGATGCAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAAGAATTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCGATGGCAGGTATGATTGAATTCGTTGGTTTAATTAAGGTCAACGTGGTCAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGCGATCCGTACGTAATTCTCTCGTTGGGCCAGCAATCAGTGAAGACACGAGTTATAAAGAGCAGTTTGAATCCAGTCTGGAACGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCCGAAATCGACATCAATCCACTGCTCACCGCGGCCCGAGCCTGTGAGAGGTCCACAATCAGTGAACCAATGCAGCTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAACGGGGTGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 1149 43.69 MSLDSFFPEMSLKLHHIDLKGGSGTQKRLKDLSSQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALTSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRKKYELLQFTSLDDQFFCPFPPPQKRNSSLSHSASSTDANLERRNYEKLPTKTRIGSAFRNSWGRKDSEHKNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGQQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 476752 483673 - Lsi04G000330.1 Lsi04g00033 660082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00033 382 SMART C2_3c 227 322 IPR000008 -
Lsi04g00033 382 SMART arf_gap_3 26 148 IPR001164 GO:0005096
Lsi04g00033 382 SUPERFAMILY ArfGap/RecO-like zinc finger 26 140 IPR037278 -
Lsi04g00033 382 CDD C2_ArfGAP 225 369 - -
Lsi04g00033 382 PRINTS HIV Rev interacting protein signature 57 74 IPR001164 GO:0005096
Lsi04g00033 382 PRINTS HIV Rev interacting protein signature 78 99 IPR001164 GO:0005096
Lsi04g00033 382 PRINTS HIV Rev interacting protein signature 38 57 IPR001164 GO:0005096
Lsi04g00033 382 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 16 382 - -
Lsi04g00033 382 Pfam Putative GTPase activating protein for Arf 27 141 IPR001164 GO:0005096
Lsi04g00033 382 CDD ArfGap 29 135 - -
Lsi04g00033 382 ProSiteProfiles C2 domain profile. 208 324 IPR000008 -
Lsi04g00033 382 Gene3D C2 domain 225 379 IPR035892 -
Lsi04g00033 382 Pfam C2 domain 227 317 IPR000008 -
Lsi04g00033 382 Gene3D Arf GTPase activating protein 14 147 IPR038508 -
Lsi04g00033 382 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 225 319 IPR035892 -
Lsi04g00033 382 ProSiteProfiles ARF GTPase-activating proteins domain profile. 26 141 IPR001164 GO:0005096
Lsi04g00033 382 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 16 382 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00033 Lsi-Chr4:476752 Lsi09g00817 Lsi-Chr9:9387587 1.53E-179 dispersed
Lsi04g00033 Lsi-Chr4:476752 Lsi02g00943 Lsi-Chr2:9334771 7.08E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00033 K12486 - csv:101221541 722.62