Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00034 ATGCACTCTAGTGTTGTTGAAATATCTAAGCTTCACCATAAGAATCTAGAACAGGCAATCAGGGGCATTCTATTGATAAAAATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAACTGGAGGAAAACCTAATGTAGCTGTCTCTAGCAGTGTTCGTGAGCTAGAGAGGGCCTGGGTGAACTATGAAGTAGGTGGTGTCAGTGATGGACTGATGGAGTTGGTGGTGATGTTTGTTATGGAAAAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCATAACCGATGTCCGACCTGCAGGCATGAACTTGGAAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTATCGGCATATACCCATACTATAGCAAGCTGAAACACGAATCTCAGTGTGTGTATCGACCCTATAACTGTCCATATGCGGGATCGGAATGCACCGTTATCGGCGATATTCCATTTTTGGTAGCACACCTCAAGGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTTGAAGCTTTCCAGCTTGGAATGGCTCCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTACAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCAGGGGGAGATCGAAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 1032 44.19 MHSSVVEISKLHHKNLEQAIRGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARTGGKPNVAVSSSVRELERAWVNYEVGGVSDGLMELVVMFVMEKCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCIGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 495319 498419 - Lsi04G000340.1 Lsi04g00034 660083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00034 343 CDD Sina 209 337 - -
Lsi04g00034 343 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 204 336 IPR008974 GO:0005515
Lsi04g00034 343 SUPERFAMILY TRAF domain-like 148 340 - -
Lsi04g00034 343 Pfam Seven in absentia protein family 137 336 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lsi04g00034 343 ProSiteProfiles Zinc finger SIAH-type profile. 148 208 IPR013010 GO:0008270
Lsi04g00034 343 MobiDBLite consensus disorder prediction 44 73 - -
Lsi04g00034 343 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 34 343 - -
Lsi04g00034 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 34 343 - -
Lsi04g00034 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 203 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01940 Lsi-Chr1:24862097 Lsi04g00034 Lsi-Chr4:495319 6.72E-116 dispersed
Lsi04g00034 Lsi-Chr4:495319 Lsi09g00815 Lsi-Chr9:9337291 0 dispersed
Lsi11g01546 Lsi-Chr11:23788105 Lsi04g00034 Lsi-Chr4:495319 2.94E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00034 K04506 - csv:101205198 578.941