Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00050 ATGGGTGTTTTTAGAGTGGTTTTGTTCTATGAAAATCACGAACTCTGTATTCTTTTGCTGTGCACTTTAATGGCAGGAATGTTTAATGGGGAGGGATCTTCGTCGGTAACTTCGTCGCCTTTGCAGTTCTTTCCATGGTCGTTATCGCCGGGTATAGGATCACCATACCCTTTTTTAAGGGAGCTGAAATCTGAAGAGAGGGGCTTGTGTCTGATTCACCTTCTTCTTGCCTGTGCCAACCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTAGGCCTTGAGCAAATTTCCCACCTTGCTTCGCCTGACGGGGACACAATGCAGCGGATTGCTGCTTACTTCACTGAGGCACTCGCCGATCGAATACTTAAATCATGGCCTGGCTTACACAAAGCCTTGAACTCTACAAAAATATTGTCAGTCCCTGAAGAGATTCTTGCCCAGAGATTGTTCTTTGAACTGTGTCCTTTCTTGAAGCTTGCATATGTGATAACTAATCAGGCTATTATAGAAGCCATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCGCAGTGGATAAACCTTCTTCAGACATTGAAAGATAGGCCAGATGGTCCACCCCACTTGAGAATAACTGGAATTCATGAACAGAAGGAAGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTTAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAGGGTCAAGACAGGTGAAGCTCTTGCAGTTAGCTCTGTACTTGAACTTCACTCGGTTTTGGCTACAGACGACGATAAGAAAACGTCGCCATCTGCATCGAAGAACTTGCAAAAACTCCTACGTATGAAGCAGCGAACACTCGGAGAGTGGCTCGAGACAGATTCGTTGCAAGTTTTTAGTAGCCCTGATTCAGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCTCAAAAGATGAACAGTTTTTTGACTGCACTGTGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAACAAGAATCAAACCTGAATGGATGTGCTTTCATGGAGAGAGTATTAGAAGCATTAAACTTCTATGCTGCATTGTTTGATTGTTTAGAGTCGACGGTGTCGAGATCATCGATCGAGCGACAAAGGGTCGAGAAGATGCTATTAGGAGAGGAAATAAAAAACATCATTGCTTGCGAGGGGGTGGAGAGGACGGAGAGGCACGAAAAGCTGGAGAAATGGATACTGAGGCTGGAATCCGTTGGGTTCGGAAAGGTTCCATTGAGTTATCATAGTATGTTACTGGGAAGTAGATTGTTGCAGAGCTATGGATATGATGGGTATAAAATCAAAGAAGAGAATGGATTTTTGTTCATCTGCTGGCAAGATAGGCCTCTTTTTTCAGTTTCAGCTTGGGGGTTTCATAGGCAAAGCTGA 1476 43.22 MGVFRVVLFYENHELCILLLCTLMAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLRVKTGEALAVSSVLELHSVLATDDDKKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFSSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGCAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGVERTERHEKLEKWILRLESVGFGKVPLSYHSMLLGSRLLQSYGYDGYKIKEENGFLFICWQDRPLFSVSAWGFHRQS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 646101 648132 - Lsi04G000500.1 Lsi04g00050 660099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00050 491 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 27 487 - -
Lsi04g00050 491 Pfam GRAS domain family 71 485 IPR005202 -
Lsi04g00050 491 ProSiteProfiles GRAS family profile. 62 486 IPR005202 -
Lsi04g00050 491 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 487 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00050 Lsi-Chr4:646101 Lsi06g00550 Lsi-Chr6:6937613 0 dispersed
Lsi04g00050 Lsi-Chr4:646101 Lsi10g00057 Lsi-Chr10:977937 8.92E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25102 PF03514 GRAS 1.10E-134 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00050 - - cmo:103489486 914.064