Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00059 ATGGCTGATTGTGGAACAGAACAGCGTACTTTGGAAGATACTTCAACGTGGGCTGTTGCAGTTGTTTGTTTTTTCTTGGTTGTTATTTCAATCTTCATTGAACATGTCATTCACCTCACTGGGAAGTGGCTGGAGAAAAGGCACAAGCCGGCTCTTGTTGAAGCTCTAGAAAAGGTTAAAGCAGAGCTTATGCTGTTGGGATTTATATCCCTACTTCTAACGGTAGGCCAAGATGCTGTCACTCAAATTTGCGTTTCGAAGGAGCTTGCGGTAACTTGGCTTCCCTGTGCAGCAAAAGCTAAAGCAGGAGTAAAAGTTGCGAAGAACACTCGTCTTAAGCTTCTTGAATTTTTAGATCCTGACTATGGTTCAAGGCGTATTTTAGCCTCAAAAGGAGACGATGCGTGTGCTAAGAGGGGCCAACTCGCCTTCGTTTCGGCATATGGAATCCATCAGCTCCATATTTTCATCTTTGTATTGGCTGTCTTCCATGTCCTATACTGCATAATCACTTTGGCTTTGGGCAGAACAAAGATGAGCAAATGGAAGGCCTGGGAGGATGAGACAAAGACAATTGAATACCAGTACTATAATGATCCAGCAAGATTTAGATTTGCAAGAGATACAACATTTGGACGCCGACACTTGAGCTTCTGGAGTCGTACACCAATTTCCCTCTGGATTGTTTGTTTCTTCAGACAATTCTTTGGATCAGTTACCAAGGTTGATTACATGACACTGAGACATGGATTCATCGTTGCACATCTAGCGCCCGGAAGTGAAGTAAAATTTGATTTCCACAAATACATTAGCAGATCTCTCGAAGACGACTTTAAAGTTGTTGTGGGGATTAGTCCAGCGATGTGGCTATTTGCTGTTCTCTTCATCCTAACCAATACAAATGGGTGGTATTCATATCTATGGCTGCCTTTCATCTCCTTAGTTATAATTCTATTAGTGGGAACGAAGCTCCATGTTATCATAACTCAGATGGGATTGACAATCCAAGAAAGGGGCCATGTTGTGAAGGGTGTTCCCGTCGTTCAACCCCGGGATGACCTGTTTTGGTTCGGACGTCCGCAACTTATTCTCTTTCTGATTCACTTTGTTCTCTTTATGGTACTATATTTAAAAAATGCATTTCAGCTTGCCTTCTTTGCTTGGACCACATACGCATTTAAGTGGAGAGCTTGCTTCCATCAGCGAATTGAAGATATTGCCATCAGACTCTCAATGGGGGTTATCATACAAGTTCTTTGCAGTTATGTGACACTCCCACTCTATGCTTTGGTGACTCAGATGGGCTCTAACATGAAACCAACCATTTTCAACGACCGAGTGGCAACGGCATTGAAGAACTGGCACCACTCTGCCAAGAAGAACATGAAGCACCATCGCAACCCAGATGGTACCTCGCCATTCTCAAGCAGGCCAACTACTCCAACGCATGGCATGTCTCCTATTCACCTTCTGCACAAACATCAGCATGGCAGCACATCTCCCAGGCTATCTGATGCCGAACCCGATCGTTGGGACATTGAAGAGTTGCCTCCTTCTTCACACCATAGTAGAGCCCATGATCATCAAGAACAAGAACATTCTGAGACAAGTAGAGAACAGGAAATGACAGTTCAACGGCCAAGTTCAACGGAAACCGGTTCCACGACACGTCCTGCTCGCCCTCAACATGAAATCACTAGGAGTCCCTCAGACTTCTCATTTGCCAAATGA 1731 44.31 MADCGTEQRTLEDTSTWAVAVVCFFLVVISIFIEHVIHLTGKWLEKRHKPALVEALEKVKAELMLLGFISLLLTVGQDAVTQICVSKELAVTWLPCAAKAKAGVKVAKNTRLKLLEFLDPDYGSRRILASKGDDACAKRGQLAFVSAYGIHQLHIFIFVLAVFHVLYCIITLALGRTKMSKWKAWEDETKTIEYQYYNDPARFRFARDTTFGRRHLSFWSRTPISLWIVCFFRQFFGSVTKVDYMTLRHGFIVAHLAPGSEVKFDFHKYISRSLEDDFKVVVGISPAMWLFAVLFILTNTNGWYSYLWLPFISLVIILLVGTKLHVIITQMGLTIQERGHVVKGVPVVQPRDDLFWFGRPQLILFLIHFVLFMVLYLKNAFQLAFFAWTTYAFKWRACFHQRIEDIAIRLSMGVIIQVLCSYVTLPLYALVTQMGSNMKPTIFNDRVATALKNWHHSAKKNMKHHRNPDGTSPFSSRPTTPTHGMSPIHLLHKHQHGSTSPRLSDAEPDRWDIEELPPSSHHSRAHDHQEQEHSETSREQEMTVQRPSSTETGSTTRPARPQHEITRSPSDFSFAK 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 739689 744533 + Lsi04G000590.1 Lsi04g00059 660108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00059 576 MobiDBLite consensus disorder prediction 541 576 - -
Lsi04g00059 576 PANTHER MLO-LIKE PROTEIN 1 4 574 IPR004326 GO:0006952|GO:0016021
Lsi04g00059 576 MobiDBLite consensus disorder prediction 498 540 - -
Lsi04g00059 576 MobiDBLite consensus disorder prediction 468 483 - -
Lsi04g00059 576 Pfam Mlo family 8 494 IPR004326 GO:0006952|GO:0016021
Lsi04g00059 576 PANTHER MLO-LIKE PROTEIN 4 574 - -
Lsi04g00059 576 MobiDBLite consensus disorder prediction 456 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00059 K08472 MLO; mlo protein - csv:101218929 1085.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00280 Lsi-Chr1:2491688 Lsi04g00059 Lsi-Chr4:739689 2.07E-77 dispersed
Lsi02g01432 Lsi-Chr2:19938652 Lsi04g00059 Lsi-Chr4:739689 2.02E-171 dispersed
Lsi04g00059 Lsi-Chr4:739689 Lsi10g01281 Lsi-Chr10:17031805 0 dispersed
Lsi07g01097 Lsi-Chr7:16356654 Lsi04g00059 Lsi-Chr4:739689 6.58E-83 dispersed
Lsi04g00059 Lsi-Chr4:739689 Lsi02g01429 Lsi-Chr2:19828608 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g491 . . . Bda15g00172 . . Bma03g00332 . . Cmo04g01433 Cma04g01359 . Car04g01437 . . . . . . . . . . . Cla05g02133 Cam05g2289 Cec05g2309 Cco05g2351 Clacu05g2283 Cmu05g2147 Cre05g2268 . . . . . . . Cme10g00061 Blo13g00727 . Bda14g00343 . Bpe04g01877 . . Bma08g00944 . . . . . . . Cpe01g01228 . . . . . . . . . . . . . . . Lsi04g00059 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01324 . 5 577 MLO family AT5G53760 62.1 4.0e-188 654.8
Lsi02g01541 . 3 606 MLO family AT5G53760 55.5 4.9e-178 621.3
Lsi02g01432 . 10 470 MLO family AT3G45290 54.0 2.4e-136 482.6
Lsi04g01324 . 1 558 MLO family AT1G26700 60.8 4.6e-181 631.3
Lsi02g01541 . 3 606 MLO family AT1G26700 54.8 3.0e-172 602.1
Lsi02g01429 . 8 510 MLO family AT2G39200 66.0 6.0e-192 667.5
Lsi04g00059 . 7 529 MLO family AT2G39200 65.0 4.3e-190 661.4
Lsi10g01281 . 8 483 MLO family AT2G39200 53.2 3.5e-147 518.8
Lsi02g01429 . 1 416 MLO family AT1G61560 66.1 7.7e-157 550.4
Lsi04g00059 . 7 413 MLO family AT1G61560 64.7 1.3e-151 533.1
Lsi10g01281 . 1 336 MLO family AT1G61560 59.2 5.8e-120 427.9
Lsi01g00525 . 10 461 MLO family AT2G17430 54.7 8.6e-140 494.2
Lsi02g01429 . 5 458 MLO family AT2G17430 51.1 1.9e-123 439.9
Lsi07g01039 . 28 451 MLO family AT2G17430 50.7 4.0e-113 405.6
Lsi01g00525 . 28 538 MLO family AT2G17480 56.0 1.5e-161 566.6
Lsi02g01429 . 8 463 MLO family AT2G17480 52.4 7.7e-126 448.0
Lsi08g00776 . 9 436 MLO family AT2G17480 50.8 2.3e-114 409.8
Lsi08g00776 . 12 369 MLO family AT1G42560 56.7 2.6e-114 409.1
Lsi01g00525 . 28 353 MLO family AT1G42560 52.6 1.1e-101 367.1
Lsi09g01887 . 6 413 MLO family AT4G24250 50.2 2.7e-98 355.9
Lsi01g00525 . 8 354 MLO family AT5G65970 60.9 1.5e-124 443.4
Lsi08g00776 . 8 367 MLO family AT5G65970 54.5 3.8e-107 385.6
Lsi02g01429 . 2 381 MLO family AT5G65970 51.1 9.7e-103 370.9
Lsi10g01281 . 2 337 MLO family AT5G65970 50.4 1.6e-89 327.0
Lsi07g01039 . 27 349 MLO family AT5G65970 50.5 1.3e-86 317.4
Lsi02g01429 . 6 488 MLO family AT2G33670 50.1 9.1e-128 454.1
Lsi01g00525 . 18 441 MLO family AT2G33670 53.4 2.0e-127 453.0
Lsi04g00059 . 64 530 MLO family AT1G11310 63.7 2.0e-167 585.9
Lsi02g01429 . 63 506 MLO family AT1G11310 64.4 1.0e-163 573.5
Lsi10g01281 . 63 454 MLO family AT1G11310 51.9 2.6e-122 436.0
Lsi09g01887 . 5 489 MLO family AT2G44110 54.9 6.4e-142 501.1
Lsi09g01887 . 1 496 MLO family AT4G02600 66.8 1.3e-185 646.4
Lsi09g01887 . 1 496 MLO family AT4G02600 66.8 1.3e-185 646.4
Lsi04g00059 . 64 530 MLO family AT1G11310 63.7 2.0e-167 585.9
Lsi02g01429 . 63 506 MLO family AT1G11310 64.4 1.0e-163 573.5
Lsi10g01281 . 63 454 MLO family AT1G11310 51.9 2.6e-122 436.0
Lsi02g01432 . 10 470 MLO family AT3G45290 54.0 2.4e-136 482.6
Lsi02g01429 . 6 488 MLO family AT2G33670 50.1 9.1e-128 454.1
Lsi01g00525 . 18 441 MLO family AT2G33670 53.4 2.0e-127 453.0
Lsi02g01429 . 1 416 MLO family AT1G61560 66.1 7.7e-157 550.4
Lsi04g00059 . 7 413 MLO family AT1G61560 64.7 1.3e-151 533.1
Lsi10g01281 . 1 336 MLO family AT1G61560 59.2 5.8e-120 427.9
Lsi01g00525 . 10 461 MLO family AT2G17430 54.7 8.6e-140 494.2
Lsi02g01429 . 5 458 MLO family AT2G17430 51.1 1.9e-123 439.9
Lsi07g01039 . 28 451 MLO family AT2G17430 50.7 4.0e-113 405.6
Lsi01g00525 . 28 538 MLO family AT2G17480 56.0 1.5e-161 566.6
Lsi02g01429 . 8 463 MLO family AT2G17480 52.4 7.7e-126 448.0
Lsi08g00776 . 9 436 MLO family AT2G17480 50.8 2.3e-114 409.8
Lsi08g00776 . 12 369 MLO family AT1G42560 56.7 2.6e-114 409.1
Lsi01g00525 . 28 353 MLO family AT1G42560 52.6 1.1e-101 367.1
Lsi01g00525 . 8 354 MLO family AT5G65970 60.9 1.5e-124 443.4
Lsi08g00776 . 8 367 MLO family AT5G65970 54.5 3.8e-107 385.6
Lsi02g01429 . 2 381 MLO family AT5G65970 51.1 9.7e-103 370.9
Lsi10g01281 . 2 337 MLO family AT5G65970 50.4 1.6e-89 327.0
Lsi07g01039 . 27 349 MLO family AT5G65970 50.5 1.3e-86 317.4
Lsi04g01324 . 5 577 MLO family AT5G53760 62.1 4.0e-188 654.8
Lsi02g01541 . 3 606 MLO family AT5G53760 55.5 4.9e-178 621.3
Lsi02g01429 . 8 510 MLO family AT2G39200 66.0 6.0e-192 667.5
Lsi04g00059 . 7 529 MLO family AT2G39200 65.0 4.3e-190 661.4
Lsi10g01281 . 8 483 MLO family AT2G39200 53.2 3.5e-147 518.8
Lsi09g01887 . 6 413 MLO family AT4G24250 50.2 2.7e-98 355.9
Lsi04g01324 . 1 558 MLO family AT1G26700 60.8 4.6e-181 631.3
Lsi02g01541 . 3 606 MLO family AT1G26700 54.8 3.0e-172 602.1
Lsi09g01887 . 5 489 MLO family AT2G44110 54.9 6.4e-142 501.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005733 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 3 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00059 Lsi_Chr04 FPKM 5.445134 7.052574 7.346954 6.556623 15.06251 14.280735 17.955425 8.425329 9.188156 7.441251