Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00069 ATGAATATTATGGCGAAAAACGACGCTTCGGCGGCGCGAGGGTTCTCCGGCAAGGACTACCACGATCCTCCGCCGGCGCCGCTCTTCGACGCGGCGGAGCTCGGCAAGTGGTCCTTTTACAGGGCCCTCATTGCCGAGTTCACTGCCACTCTTCTTTTTCTCTATGTCACCATCTTGACTGTCATTGGCTACAGCAGCCAGACCGATACCGATAAGCCCGGTGCCGATGCTTGCGACGGCGTTGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACTGCCGGCATTTCAGGAGGGCACATAAACCCGGCGGTGACGTTCGGGCTATTCTTGGCTCGTAAAGTGTCGTTGGTGCGGGCAGTGGCGTACATGGTTGCTCAGTGCTTAGGAGCCATATGCGGAACAGGGCTAGTGAAAGCGTTCCAAAAGGCTTACTTCAACAAGTACGGTGGCGGTGCGAACCAGCTCGCCCATGGCTACACCAAAGGCACCGGCTTGGGTGCTGAAATCGTCGGTACCTTTATCTTGGTCTACACCGTCTTCTCCGCCACTGACTCCAAGAGAAACGCAAGAGACTCCCATGTACCTGTACAACTGAACAGTACCTAA 633 56.24 MNIMAKNDASAARGFSGKDYHDPPPAPLFDAAELGKWSFYRALIAEFTATLLFLYVTILTVIGYSSQTDTDKPGADACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGTGLVKAFQKAYFNKYGGGANQLAHGYTKGTGLGAEIVGTFILVYTVFSATDSKRNARDSHVPVQLNST 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 849854 852731 - Lsi04G000690.1 Lsi04g00069 660118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00069 210 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00069 210 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00069 210 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00069 210 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00069 210 PANTHER AQUAPORIN PIP2-4-RELATED 12 205 - -
Lsi04g00069 210 Pfam Major intrinsic protein 34 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00069 210 Gene3D Glycerol uptake facilitator protein. 26 207 IPR023271 -
Lsi04g00069 210 SUPERFAMILY Aquaporin-like 34 204 IPR023271 -
Lsi04g00069 210 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 205 IPR034294 -
Lsi04g00069 210 ProSitePatterns MIP family signature. 108 116 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00069 Lsi-Chr4:849854 Lsi01g01347 Lsi-Chr1:11661799 4.70E-113 dispersed
Lsi04g00069 Lsi-Chr4:849854 Lsi10g01268 Lsi-Chr10:16972498 1.02E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00069 K09872 - csv:101204956 391.734