Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00088 ATGGGTCCGTCGGAAAAGGAGCTGAAAGATAGAATGGTGAATCAACTGCCAGAATCTGTGAGGGAGATTTCAGGGCTTCCCGAGTATAACGGCATCTGTAAAAAGATGTATGGGGACCTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAGGAAGAACTTGGATTAGATGTTCTTAAAGGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCTATAGAGCTTCTTCGGTCGGTCAGCCGAGGAAGCAAGCTATTTCAGGCTTCGCAGTTGGAGAAGATTGTACTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATCGACAAGCTTGGGATCTCGGACGAGGTTCGAGAACAGACTGAACTTGTTCATTCACAATTTAAACGAGCCAAAGAGAGAGTAAATATAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCTGACCCTGCAATATTGAAGAGAATTTCTGAAAAGCTGCATCTTCGGACTATGAACGATCTGAAGAAAGAATCACTAGCGATCCATGAGCTGGTGATCTCAAGCGATGGAGACCCCGGGGATGTTTTTGGAAAAATGTCATCCATTTTAAAGAAGTTGAAGGATTTTGTACAATCAGAAAACCCAGAAGTTGAAACTTCTCAAGACGAAAAAACTGCAACCATTAAACACAGATCTCCTGTCATCCCAGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTCATCGTCTCCACCGGGCAGACCTATGAGAGATCCTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACTTGTCCAAAATCTCAGCAGGCTTTATCACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTGTGGTGTGAGAACAATGGCGTTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACAAGAAACCCGGAAACAATGTTTCAGACTGTGATCGGGCGGCCATCGATGCCTTACTGGTAAAATTGGTAAATGGATCTCCCGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGTTACTAGCGAAGAGGAATTCGGATAACAGAATTTGTATTGCTGAGGCAGGAGCCATACCGTTCCTGGTCGAACTACTATCCTCAAATGATACTAGGACTCAGGAGCATGCAGTTACAGCATTACTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATTGTCGATTTACGAGCAATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAACGCAGCTGCAACCCTTTTCAGCTTATCGGTAATAGACGAGAACAAGGTTGCAATTGGAGCAGCCGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACTCCGAGAGGAAAGAAGGATGCTGCTACTGCTATTTTCAACCTCTCGATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGCATTGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGAATGGTTGATGAAGCTCTAGCCATTCTAGCCATTCTTGCAACTCACCATGAAGGAAAAATGGGAATAGGGGAAGCTGAGCCGATGGCGATTCTGTTGGAGTTCATTAGAACTGGTTCTCCACGGAACCGGGAGAATGCTGCTGCTGTGTTGTGGTCGCTTTGCAGTACTGATTTCGAGCAGTTGAAGCTAGCTAGGGAACATGGTGCAGAAGAGGCATTAAAGGAAGTGTCTGAGAATGGAACAGACAGAGCAAAGAGGAAAGCAGGAAGCATTTTAGAACTCTTTCAACGCTTTGATGGACCATCAGCTAATTTATAA 1893 44.11 MGPSEKELKDRMVNQLPESVREISGLPEYNGICKKMYGDLIRRVKLLSPLFEELRDGEEELGLDVLKGLELLKIALDSAIELLRSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHSQFKRAKERVNIADAQLDKDLAILQEEKDPDPAILKRISEKLHLRTMNDLKKESLAIHELVISSDGDPGDVFGKMSSILKKLKDFVQSENPEVETSQDEKTATIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALSHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNKKPGNNVSDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMGIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1040825 1044380 + Lsi04G000880.1 Lsi04g00088 660137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00088 630 SUPERFAMILY RING/U-box 247 323 - -
Lsi04g00088 630 SMART Ubox_2 252 315 IPR003613 GO:0004842|GO:0016567
Lsi04g00088 630 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515
Lsi04g00088 630 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515
Lsi04g00088 630 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515
Lsi04g00088 630 SMART arm_5 376 416 IPR000225 GO:0005515
Lsi04g00088 630 SMART arm_5 499 539 IPR000225 GO:0005515
Lsi04g00088 630 SMART arm_5 458 498 IPR000225 GO:0005515
Lsi04g00088 630 SMART arm_5 417 457 IPR000225 GO:0005515
Lsi04g00088 630 SMART arm_5 540 580 IPR000225 GO:0005515
Lsi04g00088 630 Pfam U-box domain 249 319 IPR003613 GO:0004842|GO:0016567
Lsi04g00088 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Lsi04g00088 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 322 IPR013083 -
Lsi04g00088 630 SUPERFAMILY ARM repeat 346 620 IPR016024 -
Lsi04g00088 630 Gene3D - 333 620 IPR011989 -
Lsi04g00088 630 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 12 623 - -
Lsi04g00088 630 PANTHER U BOX DOMAIN-CONTAINING 12 623 - -
Lsi04g00088 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Lsi04g00088 630 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842|GO:0016567
Lsi04g00088 630 Gene3D - 11 122 IPR036537 GO:0007166
Lsi04g00088 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Lsi04g00088 630 CDD RING-Ubox_PUB 253 295 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00296 Lsi-Chr3:3597088 Lsi04g00088 Lsi-Chr4:1040825 1.74E-110 dispersed
Lsi04g00088 Lsi-Chr4:1040825 Lsi10g01368 Lsi-Chr10:17834008 0 dispersed
Lsi06g00851 Lsi-Chr6:17939413 Lsi04g00088 Lsi-Chr4:1040825 2.55E-18 dispersed
Lsi08g01601 Lsi-Chr8:23977495 Lsi04g00088 Lsi-Chr4:1040825 1.13E-49 dispersed
Lsi04g00088 Lsi-Chr4:1040825 Lsi02g01363 Lsi-Chr2:18368167 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00088 - - csv:101221065 1107.05