Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00096 ATGGTGGCCGGCGGACGAATCTCGGGGTGCTCCGACATAAGGAGCATAGCCGTCCACGTCATCACCGGGAGGTGGTTCATGGTGTTTGCTTCACTCTTAATCATGGCGGCAGCTGGAGCGACCTACATGTTCAGCCTATATTCAAATGACATAAAATTTGTTTTGGGTTATGACCAAACGACGTTGAATTTGCTGAGTTTTTTCAAGGATTTGGGTGCAAACGTCGGCGTCTTGTCTGGACTTATTAACGAGGTTACGCCGCCGTGGGTGGTTCTATCCATTGGCGCGGTTTTGAATTTTTTTGGTTATTTTATGATTTGGCTCGCTGTTACTAAGCGGATCTCTACTCCCAAAGTTTGGCAAATGTGTCTCTATATTTGCATTGGAGCCAATTCTCAATCTTTTGCTAACACAGGTTCTCTTGTTACTTGTGTTAAGAACTTCCCTGAGAGTCGTGGCGTCGTTCTCGGTATCTTGAAGGGATACGTCGGACTGAGCGGCGCCATAATTACACAGCTCTTCCACGCATTTTACGGCAGCGACACCAAATCCTTAATTCTCCTCATTGGATGGCTCCCGGCGGCAATTTCCTTCGCATTTTTACGAACAATTCGTATTATGAAAGTCATCCGACAGCCAAACGAGCTCAAAGTCTTCTACAATTTCCTCTACATTTCTCTTGGCCTCGCCGGATTCCTAATGCTAATGATCATCGTAGAAAGCAAAACAGAGTTCACTCAAAACGAATACGGTGGCAGCGCCGCCGTCGTTCTCCTCCTCCTCTTCCTCCCACTCGCCGTTGTCATCATCGAAGAATACAATCTATGGAAACTCAAAACCGCCCTCATTAAATCTCCAAATCCCTCTGTTCAAATTGTAACAGAGAAACTCCCAAAAACAGAGCAACTCCAAAAAACAGAGCATCCAAAGCAAGAACCAAAAGAACCATCTTGTTGGACAACGATTTTCAACCCACCCGAACGTGGCGAGGATTTCACAATTCTCCAAGCTCTCTTCAGTGTCGACATGCTGATTCTATTCATCTCTGCAATTTGCGGTGTCGGCGGAACATTAACGGCGATCGACAATTTGGGTCAAATCGGAATGTCTTTGGGATACCCAAAAAAAAGCATTAGCACATTTGTAACATTAGTCAGCATTTGGAATTACCTCGGCCGAGTTGCCTCTGGTTTCGTCTCAGAAATCGTTTTGACAAAATACAAATTCCCTCGTCCTTTAATGCTCTCTCTAACCCTTCTTTTTTCCTGCATTGGCCATTTGATGATCGCATTTGATGTCCCAAATGGGCTTTATGTCGCTTCCATCGTAATCGGATTCTGCTTTGGAGCACAGTGGCCATTGATTTTCGCCATAATTTCAGAGCTTTTTGGATTGAAATATTACTCCACACTTTACAATTTTGGGGCAGTGGCGAGCCCAGTTGGGCTTTATGTTCTGAATGTGAAAGTGGCTGGAAATTTCTACGACAGAGAGGCAGAGAAGCAACTAATTGCAAAAGGGATAATTAGAAAAGCAGGGGAAGAATTAAAGTGCTTTGGAGGGGAATGCTTTAAGCTTTCATTCATTGTAATCACTGGAGTTAGTTTGTTGGGTATGTTTGTTTCGTTGATTTTAGTGATTAGAACGAGGAGTTTTTACAAGAGTGATATTTATAAGAAGTTTCGAGATGAAGTTGAAACAGAGGTGGCCGGAAATGGGTCTTTGGCGGCGGCCGGAGCAACGGAAGAGACGAGAAAATGA 1761 44.29 MVAGGRISGCSDIRSIAVHVITGRWFMVFASLLIMAAAGATYMFSLYSNDIKFVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLAVTKRISTPKVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLFHAFYGSDTKSLILLIGWLPAAISFAFLRTIRIMKVIRQPNELKVFYNFLYISLGLAGFLMLMIIVESKTEFTQNEYGGSAAVVLLLLFLPLAVVIIEEYNLWKLKTALIKSPNPSVQIVTEKLPKTEQLQKTEHPKQEPKEPSCWTTIFNPPERGEDFTILQALFSVDMLILFISAICGVGGTLTAIDNLGQIGMSLGYPKKSISTFVTLVSIWNYLGRVASGFVSEIVLTKYKFPRPLMLSLTLLFSCIGHLMIAFDVPNGLYVASIVIGFCFGAQWPLIFAIISELFGLKYYSTLYNFGAVASPVGLYVLNVKVAGNFYDREAEKQLIAKGIIRKAGEELKCFGGECFKLSFIVITGVSLLGMFVSLILVIRTRSFYKSDIYKKFRDEVETEVAGNGSLAAAGATEETRK 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1102253 1104753 + Lsi04G000960.1 Lsi04g00096 660145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00096 586 SUPERFAMILY MFS general substrate transporter 23 551 IPR036259 -
Lsi04g00096 586 Pfam Nodulin-like 24 269 IPR010658 -
Lsi04g00096 586 Gene3D MFS general substrate transporter like domains 338 554 IPR036259 -
Lsi04g00096 586 CDD MFS_Mch1p_like 23 539 - -
Lsi04g00096 586 PANTHER MFS TRANSPORTER 9 571 - -
Lsi04g00096 586 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 571 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02077 Lsi-Chr1:29277894 Lsi04g00096 Lsi-Chr4:1102253 4.97E-78 dispersed
Lsi03g00141 Lsi-Chr3:2026021 Lsi04g00096 Lsi-Chr4:1102253 0 dispersed
Lsi03g00144 Lsi-Chr3:2064238 Lsi04g00096 Lsi-Chr4:1102253 1.82E-180 dispersed
Lsi03g01994 Lsi-Chr3:31328766 Lsi04g00096 Lsi-Chr4:1102253 0 dispersed
Lsi03g01999 Lsi-Chr3:31359044 Lsi04g00096 Lsi-Chr4:1102253 0 dispersed
Lsi04g00096 Lsi-Chr4:1102253 Lsi04g00100 Lsi-Chr4:1135466 0 dispersed
Lsi04g00098 Lsi-Chr4:1118750 Lsi04g00096 Lsi-Chr4:1102253 7.41E-66 dispersed
Lsi06g01497 Lsi-Chr6:25432208 Lsi04g00096 Lsi-Chr4:1102253 5.12E-106 dispersed
Lsi04g00096 Lsi-Chr4:1102253 Lsi04g00097 Lsi-Chr4:1111654 0 tandem
Lsi01g02076 Lsi-Chr1:29276903 Lsi04g00096 Lsi-Chr4:1102253 1.58E-96 transposed
Lsi02g01455 Lsi-Chr2:20235090 Lsi04g00096 Lsi-Chr4:1102253 0 transposed
Lsi04g00096 Lsi-Chr4:1102253 Lsi08g00691 Lsi-Chr8:15212551 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00096 - - csv:101204293 1046.19