Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00098 | ATGATGGTTTGTGATGTTCACTTCACTCTTGATCATGGCGCCGGAGCGGCGCACATATTCAGCCTATATTCGAGTGACATAAAATCTGTTTTGGGTTACAACCAAACGACTTTGAATTTGCTAAGCTTTTTCAAAGATTTGGGTGGAAATATCGGCATTTTGTCCGGGCTTATTAACGAGGTTACACTGCCATGGGTGGTTCTGTCCATCGGCGCCTTTCTAAATTTCTTTGGTTACTTTATGATTTGGCTCGCCGTTACTCGACGGATCCCCACCCCTAAAGTTTGGCAAATGTGTCTCTATATTTGTATTGGAGCCAATTCTCAGTCTTTTGCTAATACGGGTTCTATGGTAACATTTGTCAAGAACTTTCTCGAAAATTGCGGTGTCGTTCTTGGTAAGTATTTTAATTATAAGTTTAGTTCC | 426 | 41.08 | MMVCDVHFTLDHGAGAAHIFSLYSSDIKSVLGYNQTTLNLLSFFKDLGGNIGILSGLINEVTLPWVVLSIGAFLNFFGYFMIWLAVTRRIPTPKVWQMCLYICIGANSQSFANTGSMVTFVKNFLENCGVVLGKYFNYKFSS | 142 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1118750 | 1119270 | + | Lsi04G000980.1 | Lsi04g00098 | 660147 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00098 | 142 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 13 | 136 | - | - | |
| Lsi04g00098 | 142 | Pfam | Nodulin-like | 13 | 133 | IPR010658 | - | |
| Lsi04g00098 | 142 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE | 13 | 136 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00098 | Lsi-Chr4:1118750 | Lsi04g00096 | Lsi-Chr4:1102253 | 7.41E-66 | dispersed | |
| Lsi04g00097 | Lsi-Chr4:1111654 | Lsi04g00098 | Lsi-Chr4:1118750 | 2.23E-63 | tandem | |
| Lsi04g00098 | Lsi-Chr4:1118750 | Lsi04g00099 | Lsi-Chr4:1126070 | 2.71E-50 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00098 | - | - | csv:101204293 | 208.379 |