Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00099 ATGGAGGGATTCAACCTGAAATCCTTTACACTAAATCTAATCAAAGGGTCATGGTTCATGATGTTTGCGTCATTCCTAATCATGTCGATGGCAGGCATTCCGTACATGTTCGGCTTATACTCGAGCACCATAAAATCTGTGTTAGGGTACGACCAAACAACCTTAAACTTCATAAGTTTCTTCAAAGACGTCGGAACGACGGTCGGTGTTGTAGCGGGATTAATCAACGAAGTAACCCCGCCGTGGTCCATTCTAGCCATGGGAGCTGTTCTCAATTTCTTTGGCTTCTTCATGATTTGGTTATCCGTCTCCGAAAAAATCCCAACTCACGTTTGGTTAATGTGCCTCTACATCTGCATCGGTGCCAACGCCACGACGTTCGCCAACACCGGCGCGTTAGTTACGTGCGTAAAAAACTACCCGCAACGGCGAGGCGTCGTGATTGGGATTTTGAAAGGGTATATGGGATTGAGCGGGGCAATTGTGACGCAATTGTATCATGCCATATATGGGATAGATGAGAAGTCGTTGATATTATTGTTGGGGTGGTTGCCAGCGGCGGTGTCGTTGGTGTTTATGCCGACAGTGCGGCGGATGAAGGTGGAGCATGAGGAGGATGAGTTGAAAGGGTCACCACCATTGAAGAACACAGTACCAATGTCACTCATCCCAAAGAAACCAAAACCCCAACCACAACAACCCATCAAAGTCAAGTGGTGGAAAAACGTATTCAATCCCCCACCAAGAGGAGATGATTGGACAATCCTCCAAGCCCTTTTTAGCTTCGACATGTTCCTCCTCTTCCTGGCCACCGCCTGCGGCGTCGGCGGCACTCTCACCGCCATCGACAACCTCGGCCAAATCGGCCAATCCCAAAATTACCCCAAAAAAAGCATCAGCACATTCGTTTCCCTCGTCAGCATCTGGAATTACCTCGGTCGAGTAATGGCTGGATTCCTCTCCGAACATTTACTCATCAAATACAAATTCCCTCGTCCTTTAATGCTCACAATCGTCCTTCTTCTTTCATGCATTGCCCATCTTTTAATCGCCTTCAATCCCGCTGGCGGCCTTTACATTGCCTCTGTTATGACCGGATTCTGTTACGGCGCTCAATGGCCTCTGCTTTTTGCCATTGTTTCTGAGATTTTTGGGCTGAAATATTATGCGACTCTGTATAATTTCGGGTCGGTGGCTAGCCCAGTAGGGCTTTATGTGTTGAATGTGAATGTGGCTGGGTATTTGTATGATAAGGAAGCTAAGAAGCAGCTGGCGATGGCGGGGAGGATTAGGAAAACAGGGGAGGAGTTGATCTGTCATGGGACGGTGTGTTTTAAGCTGTCTTTTGTGATTATTACGGCAGTGAGTTTGTTTGGGGCTTTAGTTTCTTTGGTTTTGGTGTTGAGGACAAAGAAGTTTTATAAGAGTGATATTTATCGGAAATTTAGGGAGACAGAGGAGGCGGCGGCGGTGGCGTAG 1479 47.4 MEGFNLKSFTLNLIKGSWFMMFASFLIMSMAGIPYMFGLYSSTIKSVLGYDQTTLNFISFFKDVGTTVGVVAGLINEVTPPWSILAMGAVLNFFGFFMIWLSVSEKIPTHVWLMCLYICIGANATTFANTGALVTCVKNYPQRRGVVIGILKGYMGLSGAIVTQLYHAIYGIDEKSLILLLGWLPAAVSLVFMPTVRRMKVEHEEDELKGSPPLKNTVPMSLIPKKPKPQPQQPIKVKWWKNVFNPPPRGDDWTILQALFSFDMFLLFLATACGVGGTLTAIDNLGQIGQSQNYPKKSISTFVSLVSIWNYLGRVMAGFLSEHLLIKYKFPRPLMLTIVLLLSCIAHLLIAFNPAGGLYIASVMTGFCYGAQWPLLFAIVSEIFGLKYYATLYNFGSVASPVGLYVLNVNVAGYLYDKEAKKQLAMAGRIRKTGEELICHGTVCFKLSFVIITAVSLFGALVSLVLVLRTKKFYKSDIYRKFRETEEAAAVA 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1126070 1128408 + Lsi04G000990.1 Lsi04g00099 660148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00099 492 Pfam Major Facilitator Superfamily 268 471 IPR011701 GO:0022857|GO:0055085
Lsi04g00099 492 PANTHER MFS TRANSPORTER 5 209 - -
Lsi04g00099 492 SUPERFAMILY MFS general substrate transporter 18 473 IPR036259 -
Lsi04g00099 492 PANTHER MFS TRANSPORTER 229 489 - -
Lsi04g00099 492 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 5 209 - -
Lsi04g00099 492 CDD MFS_Mch1p_like 18 460 - -
Lsi04g00099 492 Pfam Nodulin-like 18 202 IPR010658 -
Lsi04g00099 492 Gene3D MFS general substrate transporter like domains 253 475 IPR036259 -
Lsi04g00099 492 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 229 489 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02076 Lsi-Chr1:29276903 Lsi04g00099 Lsi-Chr4:1126070 1.91E-103 dispersed
Lsi04g00099 Lsi-Chr4:1126070 Lsi04g00097 Lsi-Chr4:1111654 0 dispersed
Lsi04g00098 Lsi-Chr4:1118750 Lsi04g00099 Lsi-Chr4:1126070 2.71E-50 tandem
Lsi04g00099 Lsi-Chr4:1126070 Lsi04g00100 Lsi-Chr4:1135466 5.14E-139 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00099 - - twl:119980280 538.495