Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00100 ATGGAGGGATTCAACATGAAATCCTTTACACTAAAACTAATCGAAGGGTCATGGTTCATGATGTTCGGGTCGTTCCTAATCATGTCGATGGCGGGCATCCCATACATGTTCGGCTTGTATTCGAGCACCATAAAATCTGTCTTAGGGTACGACCAAACAACCCTAAACTTCATAAGTTTCTTCAAAGATGTTGGTACAACGGTCGGTGTCGTAGCGGGGTTAATCAACGAAGTAACCCCACCATGGTCCATCCTAGCCATGGGAGCTCTCCTCAACTTTTTCGGCTACTTCATGATCTGGCTATCCGTCTCCGAAAAAATCCCGACTCACGTTTGGTTAATGTGTCTCTACATCTGTGTCGGTGCCAACGCCACGACGTTTGCCAACACTGGTGCGTTAGTGACGTGCGTAAAGAACTACCCGCAACGGCGTGGCGTCGTGATTGGGATTTTGAAAGGATATATGGGATTGAGTGGGGCAATTGTGACACAATTGTATCATGCTATATATGGGAAAGATGAGAAGTCGTTGATATTGTTGTTGGGGTGGTTGCCGGCAGCGGTGTCATTCGTGTTTTTGCCGACAGTACGGCGGATGAAGGTGGAGCATGAGGAGGATGAGTTGAGGGTTTTTTATAGGTTTTTGTATATATCGTTGGGATTAGCAGGATTTTTGATGGTGATGATAATTTTGCAACAAAAGTTTAGTTTTGACAGAGGGGAATACGGAGGGAGTGCGGCGGTGGTTACTTTTTTGTTGCTTTTTCCTATTGTGGTTGTTGTTGCTCAAGAGTTTAAGTCGTGGCGGCGGTTGAATAAGCCGGCGGTTCTTGAAAATGGTCTTTCCTTAACGCCGGTGAGTGTGTCACCACCATCGAAGAACACAACACCAATGATACTTCTCCCAAAGAAACTAAAACCTCAACAACAACAACAACCCCAACAACCCATCAAAGTCCAGTGGTGGAAAAACGTATTCAATCCCCCACCAAGGGGAGATGATTGGACAATCCTCCAAGCTCTGTTTAGCTTCGACATGTTTCTCCTCTTCCTCGCCACCGCCTGCGGCGTCGGCGGCACCCTCACCGCCATCGACAACCTCGGCCAAATAGGTCAATCCCAAAATTACCCACAAAAAAGCATCAGCACATTCGTTTCCCTCGTCAGCATCTGGAATTACCTCGGTCGAGTCATGGCCGGATTCCTCTCTGAACATTTACTCATCAAATACAAATTCCCTCGTCCTTTAATGCTCACAATCGTTCTCCTTCTTTCCTGCATTGCCCATCTTCTAATCGCCTTCAATCCCGCAGGCGGTCTTTACATTGCCTCTGTTTTAACTGGATTCTGTTACGGTGCTCAATGGCCTCTGCTTTTCGCCATTGTTTCTGAGATTTTTGGACTGAGATATTATGCGACTCTGTATAATTTCGGGTCGGTGGCTAGCCCAGTGGGGCTTTATGTGTTGAATGTGAATGTGGCTGGGTATTTGTATGATAAGGAAGCGAAGAAGCAACTGGCAATGGTGGGGAGGATTAGGAAAACAGGGGAGGAGTTGATTTGTCATGGGACGGTGTGTTTTAAGTTGTCTTTTGTTATTATTACAGCAGTGAGTTTGTTTGGGTCTTTGGTTTCTTTAGTTTTGGTGTTGAGGACGAAGAACTTTTATAAGAGTGATATTTATAGGAAGTTTAAAGAGGCCGAGGAGGCCGCCGCCGCCGCCGCGTTAAAGGAAGAAGAGGAGGATGGTGGTGATGGGGTTAGAAACGGCGGTGGTTTAGTGGAGGAGTCGAAACAGGGGCTTAAGCAATGA 1812 46.52 MEGFNMKSFTLKLIEGSWFMMFGSFLIMSMAGIPYMFGLYSSTIKSVLGYDQTTLNFISFFKDVGTTVGVVAGLINEVTPPWSILAMGALLNFFGYFMIWLSVSEKIPTHVWLMCLYICVGANATTFANTGALVTCVKNYPQRRGVVIGILKGYMGLSGAIVTQLYHAIYGKDEKSLILLLGWLPAAVSFVFLPTVRRMKVEHEEDELRVFYRFLYISLGLAGFLMVMIILQQKFSFDRGEYGGSAAVVTFLLLFPIVVVVAQEFKSWRRLNKPAVLENGLSLTPVSVSPPSKNTTPMILLPKKLKPQQQQQPQQPIKVQWWKNVFNPPPRGDDWTILQALFSFDMFLLFLATACGVGGTLTAIDNLGQIGQSQNYPQKSISTFVSLVSIWNYLGRVMAGFLSEHLLIKYKFPRPLMLTIVLLLSCIAHLLIAFNPAGGLYIASVLTGFCYGAQWPLLFAIVSEIFGLRYYATLYNFGSVASPVGLYVLNVNVAGYLYDKEAKKQLAMVGRIRKTGEELICHGTVCFKLSFVIITAVSLFGSLVSLVLVLRTKNFYKSDIYRKFKEAEEAAAAAALKEEEEDGGDGVRNGGGLVEESKQGLKQ 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1135466 1138343 + Lsi04G001000.1 Lsi04g00100 660149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00100 603 PANTHER MFS TRANSPORTER 5 577 - -
Lsi04g00100 603 MobiDBLite consensus disorder prediction 575 603 - -
Lsi04g00100 603 CDD MFS_Mch1p_like 18 541 - -
Lsi04g00100 603 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 5 577 - -
Lsi04g00100 603 Pfam Nodulin-like 18 261 IPR010658 -
Lsi04g00100 603 Gene3D MFS general substrate transporter like domains 295 512 IPR036259 -
Lsi04g00100 603 Pfam Major Facilitator Superfamily 351 551 IPR011701 GO:0022857|GO:0055085
Lsi04g00100 603 SUPERFAMILY MFS general substrate transporter 22 558 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00096 Lsi-Chr4:1102253 Lsi04g00100 Lsi-Chr4:1135466 0 dispersed
Lsi04g00100 Lsi-Chr4:1135466 Lsi08g00691 Lsi-Chr8:15212551 0 dispersed
Lsi04g00099 Lsi-Chr4:1126070 Lsi04g00100 Lsi-Chr4:1135466 5.14E-139 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00100 - - csv:101205503 1016.14