Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00102 | ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGCTTCAATCTTTGGTTTCGCCTCTGGTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTAAATGCATCTGTATGGAGAAGACAAATGCTGTCCTTCGAATCAAAGGATCAAACTTTTTCTTGTCTCACCGGAAACCCCATCGATGATTGCTGGCGGTGCGACCCGAATTGGGCGGCAAACCGACAGCGACTGGCCGACTGCGGTATCGGGTTTGGCCGTGACGCCATGGGCGGCAAAGGCGGCAAGATCTACATCGTTACCGACTCGTCGGATTTGGATCCGGCGAACCCTACGCCGGGAACTCTCCGGCACGCTGTGATCCAATTCGAACCACTGTGGATCATCTTCTCCGCCGACATGACTATCCGGCTGAAATACGAACTAATCATAAACAGTTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATAACCGGCGGCGGATGCATCACCATTCAATACGTGTCCAATGTCATCATCCACAACGTCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGATCGACCCCAACTCATGTGGGCCACCGGGGGCTATCAGACGGAGATGGGATCTCAATATTTAGCTCAAGAAAGATATGGATCGACCATTGCTCATTGTCATACTGCACAGATGGGCTAATAGATGCAATAATGGGATCAACAGGAATTACAATATCCAACAGCTACTTCTCTCACCATGATGAAGTGATGTTGTTGGGGCACGATGATCGATACGTGCAAGACTCGGGGATGCAAGTCACCATTGCCTTTAACCACTTCGGTGAGGCATTGGTTCAACGCATGCCCCGTTGTAGACATGGCTATATTCACGTTGTCAATAATGACTTCACTGCTTGGGAAATGTATGCCATTGGAGGCAGCGCCCAACCCACTATTAACAGCCAGGGTAATCGTTACACTGCTCCAGTGAATCCTAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGACTGGGCGGGGTGGAATTGGCGGACAGACGGCGATATTTTGGTGAACGGCGCGTTTTTTGTACCGTCCGGTGCCGGACTTAGCACCCAGTACGGCAAGGCTTCCAGCGTGGAGCCTAAGTCTGTGGCTCTCATCAATCAACTCACTATGAACGCCGGCGTATTGGGCGCCCCCAGGTAA | 1248 | 50.96 | MFPVLSILLIWMSASIFGFASGSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSFESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIRLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNVHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAQPTINSQGNRYTAPVNPNAKEVTRRLDAAETDWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPR | 415 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1154248 | 1158072 | - | Lsi04G001020.1 | Lsi04g00102 | 660151 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00102 | 415 | Pfam | Pectate lyase | 154 | 334 | IPR002022 | - | |
| Lsi04g00102 | 415 | Gene3D | - | 70 | 412 | IPR012334 | - | |
| Lsi04g00102 | 415 | PANTHER | PECTATE LYASE | 10 | 413 | - | - | |
| Lsi04g00102 | 415 | SUPERFAMILY | Pectin lyase-like | 60 | 388 | IPR011050 | - | |
| Lsi04g00102 | 415 | SMART | amb_all | 145 | 342 | IPR002022 | - | |
| Lsi04g00102 | 415 | PRINTS | Pollen allergen Amb family signature | 93 | 110 | IPR018082 | - | |
| Lsi04g00102 | 415 | PRINTS | Pollen allergen Amb family signature | 153 | 169 | IPR018082 | - | |
| Lsi04g00102 | 415 | PRINTS | Pollen allergen Amb family signature | 217 | 238 | IPR018082 | - | |
| Lsi04g00102 | 415 | PRINTS | Pollen allergen Amb family signature | 117 | 142 | IPR018082 | - | |
| Lsi04g00102 | 415 | PRINTS | Pollen allergen Amb family signature | 297 | 316 | IPR018082 | - | |
| Lsi04g00102 | 415 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - | |
| Lsi04g00102 | 415 | PRINTS | Pollen allergen Amb family signature | 361 | 385 | IPR018082 | - | |
| Lsi04g00102 | 415 | PRINTS | Pollen allergen Amb family signature | 390 | 413 | IPR018082 | - | |
| Lsi04g00102 | 415 | PANTHER | PECTATE LYASE 18-RELATED | 10 | 413 | IPR045032 | GO:0030570 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00102 | Lsi-Chr4:1154248 | Lsi09g01161 | Lsi-Chr9:18677108 | 0 | dispersed | |
| Lsi01g01298 | Lsi-Chr1:11251835 | Lsi04g00102 | Lsi-Chr4:1154248 | 5.04E-144 | transposed | |
| Lsi01g01390 | Lsi-Chr1:12042030 | Lsi04g00102 | Lsi-Chr4:1154248 | 4.56E-47 | transposed | |
| Lsi04g00102 | Lsi-Chr4:1154248 | Lsi08g00688 | Lsi-Chr8:15184400 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00102 | K01728 | - | csv:101205739 | 818.15 |