Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00121 ATGAACTGTCTTCAAAACCTTTCAATATCATCTTCTTTTCCGTTCCGGAGCTTGAAATGCCGACAGAGACAGCCTGAATTCCAGCTCTGTAACCTGGTGATAAAGAACTTTACCGATCTACATCGACGTTCTACCGTGAAGGCAGTGTCTAGCTCTACATCAAGTGCCGAAATGAGTGGCGCTGAAGTGGATGATGCCGAGGAAAAGGAGGAAAAATCTGAAATATATAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTTGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAAGATGTTGACAAGCTCCGCAGCATTGGAGTAAAAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTGGAGGATTTTGATGCATTCGACCTACGACTAAGATTACCAGCTGTTGTAAGCATATTACATAAAGCCATAACCCGAAATGGTGGAGTGACTTACATACATTGCACTGCTGGACTTGGAAGGGCTCCTGCTGTTGCGATGGCGTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCACTAGAATTACTGCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAATGCAACTGCTGATATTAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAACAGGGAACTGCCGGAAGGACGATATGAATACAAGTATATTATTGATGGTATATGGACGTGCAACGAAAACGAGCCTGTCACTGCACCCAACCAAGATGGCCACGTCAACAATTTTGTTGAAGTTGTTGAAGATGAGGATCCAGGTAGTGATAGAGCACTTCTTCGGAGAAGGTTAACTGGAAATGAACCAGAACTCACGGCCGAAGAAAGAAGCAAAATAAAACAATTTCTTGAAGATTGCCCGGATGAAAATTGA 966 42.75 MNCLQNLSISSSFPFRSLKCRQRQPEFQLCNLVIKNFTDLHRRSTVKAVSSSTSSAEMSGAEVDDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFICPDLIVGSCLQTPEDVDKLRSIGVKTVFCLQQDPDLEDFDAFDLRLRLPAVVSILHKAITRNGGVTYIHCTAGLGRAPAVAMAYMFWVQGYKLNEALELLLSKRSCFPKIDAIKNATADIRIPLKFDEARGAWILNRELPEGRYEYKYIIDGIWTCNENEPVTAPNQDGHVNNFVEVVEDEDPGSDRALLRRRLTGNEPELTAEERSKIKQFLEDCPDEN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1337164 1344980 - Lsi04G001210.1 Lsi04g00121 660170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00121 321 SUPERFAMILY E set domains 224 278 IPR014756 -
Lsi04g00121 321 SMART dsp_5 97 216 IPR020422 GO:0006470|GO:0008138
Lsi04g00121 321 Pfam Dual specificity phosphatase, catalytic domain 137 208 IPR000340 GO:0008138|GO:0016311
Lsi04g00121 321 CDD E_set_AMPKbeta_like_N 222 278 - -
Lsi04g00121 321 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 147 205 IPR000387 GO:0016311|GO:0016791
Lsi04g00121 321 ProSiteProfiles Dual specificity protein phosphatase domain profile. 97 233 IPR020422 GO:0006470|GO:0008138
Lsi04g00121 321 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 139 221 - -
Lsi04g00121 321 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 138 - -
Lsi04g00121 321 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 211 IPR029021 -
Lsi04g00121 321 MobiDBLite consensus disorder prediction 295 321 - -
Lsi04g00121 321 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 222 320 - -
Lsi04g00121 321 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 139 221 IPR030079 GO:0005982|GO:0007623|GO:0019203
Lsi04g00121 321 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 138 IPR030079 GO:0005982|GO:0007623|GO:0019203
Lsi04g00121 321 Pfam Glycogen recognition site of AMP-activated protein kinase 223 281 IPR032640 -
Lsi04g00121 321 Gene3D Protein tyrosine phosphatase superfamily 86 233 IPR029021 -
Lsi04g00121 321 Gene3D Protein tyrosine phosphatase superfamily 251 321 IPR029021 -
Lsi04g00121 321 CDD DSP_laforin-like 96 216 IPR045204 GO:0019203|GO:0046838
Lsi04g00121 321 MobiDBLite consensus disorder prediction 51 73 - -
Lsi04g00121 321 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 222 320 IPR030079 GO:0005982|GO:0007623|GO:0019203
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00121 Lsi-Chr4:1337164 Lsi04g01038 Lsi-Chr4:12179322 9.26E-35 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00121 - - csv:101212390 528.48