Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00123 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGACGATTCAGGGCAACGCTTCTAATGGCGGCAATGTTCAGAGATCCAAGAGCTTTGCCTTTCGAGCTCCTCAGGAGAATTTTACAATTCAGGATTTTGAATTGGGAAAGATTTATGGGGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTTTATACTGCAGAAGTGGTCGATGCCCTCGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAAAACTTGCTACTTACTACTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGATAGTCGAATTACTGTTCTCCCAAATGCAGCATCAGATGATAAAGCTTGTACATTTGTGGGAACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCTTCCCCAGCAACTTTCGGAAATGACCTTTGGGCGCTCGGGTGCACCTTGTACCAGATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCAAGAGATCTAAAATTCCCCAGCTATTTTTCCGAGCAAGCAAGGGATCTCATCGACCACCTATTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCCGAGGGTTATACTTCTCTCAAGAATCATCCCTTCTTTGAGGGGGTTGATTGGAACAACATAAGAGCACAAACTCCTCCCAGGCTTGCTTTAGAAGCAGGGAGTCACTCAAATGAGAACGATGATGGCTCCGAGTCCTCTTGGAATCCCTCACATATTGGAGACGGCGCTTCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCCGAAGGATCACATCATATTACTCGGCTTGCATCGATCGACTCCTTTGATTCAAAATGGCAACAATTCCTTGAACCTGGGGAGTCTGTTCTTATGATCTCAATGGTGAAAAAGCTTCAGAAGATAACAAGCAAAAAGGTTCAACTCATTCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATTATCTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACAGGGTATCGCCTGTGGGATCCCACTGCCCACAAGGTTATCATCAGCAGGGATGTGATCTTTATGGAAGATAAGAAACAAGTAGCAAATGATAGTACTGTTAATAAAAGCTCAGAAACTACAACTGTAAATGTGGAGAAAGAATCTGTGGAAGACTCTTCTGAAGCTGAACCAGTACACGCGATCCAAGATCTAGCTGAGTCACAAGTACCAGAAATTCGTCGATTCGGCTCAGTGGCACTAAGCACAGTTCTTACTTACCCTCTCGACACTATCAAAACTCTTATCCAGGTGGGTTCTGATCCTTTAGGATCTGGTAAACAGTTGACGACTACTCAGACTTTACAGAGAATTCAATCTTTCACAGGAAATTCAGGTCTGTATAGTGGATTTGGATGGTTGGCCTTTGGGAGACTATTTGGTATAGGAGCTCGATTTGGAATATATGAAATTGTGACAGCTTTTTATAAAGATGGTCGTGAAGATGATTACGTGCATGTGTCTGAAGCTCTTCTAGCTGGACTCATGGCTGGTGCTGTGGAATCATTGATATGCTCTCCGTTTGAGCTTGTTAAACTTCGTGCCCAGGTGACCTCTGCTGTTCGTTTACCAAGCCCAGGTTCTCTCGTCGGACGAGAAAGAGCTCTTGCACCTTCTATGTCAAGATTTCTTCATGGCTATACACTGGATCAGAAGGCCTTAAACTGTTCAGTTGGTCTTTTATCCACCCTAACAACTAAGCACCCAAATATAAAAGGTGCTTTACTAGAGTATCCATGGATGATGACGGGGTCCGGGAGGCCACCTGCAGTCAGCAACGTGCATAGGCCATCAGATATCATCTCACTAGAAGGATGGCGGGCATTTTGGGGAGGTCTACGATCTGGGATCGCAAGGGATTCCATCTTTAGTGGCGTATTTTTCTCAACCTGGCAATTTCTGCACCAATCTATGCTTATTTGGAAGAGCATCGAGATGGATCCACCACCCAGGTCAAATGATGAAGTAGGCCCGCTGTCTCCGTTTTCAGTTAGTCTTGCAGCTGGATTTTCTGGTGCAGTTGCTGCGGCTGCTTCTCATGGTTTTGATACTGCCAAGAGTCGATCACTATGCACTGTGTTGCCCAAGTATGTCGCCATGGAGAGAAAGTTGCTCAAGTGGCGAAGACCGGGTAATAGATTCGAGAGAACTACAGGAATTCATCCTGCAGATCGAAGTCTCCTGTTTCGTGGCATAGGATTGCGAATGGCTCGCTGTGGTTTAGGGTCATTTTTTATGGTTGGAGGTTACTATTTGATTATTGATCATTTGTTGAAATGA 2658 43.79 MLAMEKDFDAKLTIQGNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPDMALESCEGGELFDQITRKGRLSEDEARFYTAEVVDALEYIHNMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDLKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYTSLKNHPFFEGVDWNNIRAQTPPRLALEAGSHSNENDDGSESSWNPSHIGDGASRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSHFKICTGYRLWDPTAHKVIISRDVIFMEDKKQVANDSTVNKSSETTTVNVEKESVEDSSEAEPVHAIQDLAESQVPEIRRFGSVALSTVLTYPLDTIKTLIQVGSDPLGSGKQLTTTQTLQRIQSFTGNSGLYSGFGWLAFGRLFGIGARFGIYEIVTAFYKDGREDDYVHVSEALLAGLMAGAVESLICSPFELVKLRAQVTSAVRLPSPGSLVGRERALAPSMSRFLHGYTLDQKALNCSVGLLSTLTTKHPNIKGALLEYPWMMTGSGRPPAVSNVHRPSDIISLEGWRAFWGGLRSGIARDSIFSGVFFSTWQFLHQSMLIWKSIEMDPPPRSNDEVGPLSPFSVSLAAGFSGAVAAAASHGFDTAKSRSLCTVLPKYVAMERKLLKWRRPGNRFERTTGIHPADRSLLFRGIGLRMARCGLGSFFMVGGYYLIIDHLLK 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1376423 1392475 + Lsi04G001230.1 Lsi04g00123 660172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00123 885 CDD STKc_PDK1 42 296 IPR039046 GO:0004674
Lsi04g00123 885 Gene3D Phosphorylase Kinase; domain 1 17 102 - -
Lsi04g00123 885 Pfam Mitochondrial carrier protein 525 603 IPR018108 -
Lsi04g00123 885 Pfam Mitochondrial carrier protein 613 762 IPR018108 -
Lsi04g00123 885 SUPERFAMILY Protein kinase-like (PK-like) 41 338 IPR011009 -
Lsi04g00123 885 Gene3D - 342 477 IPR011993 -
Lsi04g00123 885 SMART serkin_6 44 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00123 885 SUPERFAMILY PH domain-like 290 452 - -
Lsi04g00123 885 Pfam Protein kinase domain 46 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00123 885 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 435 - -
Lsi04g00123 885 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 18 435 - -
Lsi04g00123 885 MobiDBLite consensus disorder prediction 315 357 - -
Lsi04g00123 885 ProSiteProfiles Solute carrier (Solcar) repeat profile. 512 601 IPR018108 -
Lsi04g00123 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Lsi04g00123 885 ProSiteProfiles Protein kinase domain profile. 44 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00123 885 SUPERFAMILY Mitochondrial carrier 524 875 IPR023395 -
Lsi04g00123 885 Gene3D Mitochondrial carrier domain 522 885 IPR023395 -
Lsi04g00123 885 MobiDBLite consensus disorder prediction 323 357 - -
Lsi04g00123 885 Pfam PH domain 371 450 IPR033931 -
Lsi04g00123 885 Gene3D Transferase(Phosphotransferase) domain 1 103 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00123 Lsi-Chr4:1376423 Lsi06g01506 Lsi-Chr6:25490687 1.75E-48 dispersed
Lsi04g00123 Lsi-Chr4:1376423 Lsi10g00018 Lsi-Chr10:296026 1.90E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83547 PF00069 Pkinase 3.10E-53 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00123 K06276 - csv:101212874 848.58