Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00133 ATGGCTTCTTTCTCCCTAATCGTCTTTTTCCTCTCCGGTTTAATCTTCTTCCTCACCAGAAAACCCATAAAAAACCGCCCCAAACTCCCTCCTGGACCGCCCGGTTGGCCCCTCGTCGGGAACCTCTTTCAAGTCGCCCTGTCCAAACAACCCTTCTTCGAATACATCGAAGATCAACGCCGAATTTACGGCCCAATTTTTACCCTCAAAATGGGCACTACAACAATGGTTGTATTGAGCGATTCGAATCTCATTCACGAAGCTCTCATTAAAAAGGGGGCAATTTTTGCTGACCGGCCCAGAGAAAATCCTACCCGGATTATATTCAGTAGCAACAAATTTTCCGTCAATGCGGCGGTTTACGGCCCTATATGGCGGACCCTCCGCCGCAACATGGTGGAAAATATGCTGAGCTCTGGCAAGGTAAAGGAGTTTCGTGGCGTAAGGGAAAAAGCAATGGAAAGATTCGTGAAGCGGTTACGAGATGAAGCAGAGGCTAATAACGGCGTCGTTTCAGTGTTGAAAAACGCGCGTTTTGCGGTGTTTTGGATTCTGCTGACAATGTGTTTTGGTTTCGAGATGGAAGAAGAAACGGTTGTGAAAATGGACGAGATTCTCAAATCCGTTTTGATCACACTCGAACCGAGAATCGACGATTATTTCCCGATTCTAACTCCTTTTTTTTCTAGAGAAAGAAATCGAGCGAATTTCGTCCGAAAAAAACAAGTCGAATTCGTCATTGAGTTAATTAATCGGCGGCGGCGGGCGCTGGAGAATCCGGCGTCCGACTGCGCTGCGACGTCGTTTTCGTACCTCGACACGCTTTTCGATTTGGAAATCGACGGCCGTGGCGGGAAAGGGAAGTCGTCGGCGACGGATGAGGAATTGGTGACACTTTGTTCGGAGTTTTTGAACGGCGGGACGGACACAACGGCGACGGTGATAGAGTGGGGGATAGCGGAGTTGATAGGGAATCCAGAAGTCCAGAGGAAAGTTGTGGAAGAAATTAAAGAGACGGTTGGTGAAAGAAAAATAGAGGAAAAAGACGTGGAGAAAATGGTATATTTACAAGCGGTTGTGAAAGAAGTGCTGCGAAAACATCCTCCGACGTTCTTTACTTTGACGCACTCTGCGACGGAGCCGGCGAAATTGGCAGGATACGACATCCCAAAGGACACGAACGTAGAATTCTTTTTACCCGCCATCGGAAAGGATCCGAAGTTGTGGAAGAATCCAGATAAATTCAAACCAGAAAGATTTTACTCCAACGAGGAAGAAGCCGACATTACTGGCGTCACTGGCATCAGAATGATGCCGTTCGGCATAGGGCGGCGAATCTGCCCGGGCTTGGGATTGGCCACTGTCCACATTCATTTAATGCTTGCTAGAATGCTGCAGGAGTTTGAATGGACTATCTATCCGCCGTCGAGCTCCGTTGACTTTTCATGGAAGATGGAGTTCACCGTCATCATGAAAAATCCTCTTAGGGCTATTGTCAAATCAAGGGTTTGA 1512 47.75 MASFSLIVFFLSGLIFFLTRKPIKNRPKLPPGPPGWPLVGNLFQVALSKQPFFEYIEDQRRIYGPIFTLKMGTTTMVVLSDSNLIHEALIKKGAIFADRPRENPTRIIFSSNKFSVNAAVYGPIWRTLRRNMVENMLSSGKVKEFRGVREKAMERFVKRLRDEAEANNGVVSVLKNARFAVFWILLTMCFGFEMEEETVVKMDEILKSVLITLEPRIDDYFPILTPFFSRERNRANFVRKKQVEFVIELINRRRRALENPASDCAATSFSYLDTLFDLEIDGRGGKGKSSATDEELVTLCSEFLNGGTDTTATVIEWGIAELIGNPEVQRKVVEEIKETVGERKIEEKDVEKMVYLQAVVKEVLRKHPPTFFTLTHSATEPAKLAGYDIPKDTNVEFFLPAIGKDPKLWKNPDKFKPERFYSNEEEADITGVTGIRMMPFGIGRRICPGLGLATVHIHLMLARMLQEFEWTIYPPSSSVDFSWKMEFTVIMKNPLRAIVKSRV 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1537748 1540387 + Lsi04G001330.1 Lsi04g00133 660182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00133 503 PANTHER CYTOCHROME P450 77A4 3 501 - -
Lsi04g00133 503 Gene3D Cytochrome P450 23 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 3 501 - -
Lsi04g00133 503 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 Pfam Cytochrome P450 30 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 SUPERFAMILY Cytochrome P450 30 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00133 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00414 Lsi-Chr1:3534613 Lsi04g00133 Lsi-Chr4:1537748 1.00E-145 dispersed
Lsi04g00133 Lsi-Chr4:1537748 Lsi10g00246 Lsi-Chr10:4084478 8.82E-116 dispersed
Lsi04g00133 Lsi-Chr4:1537748 Lsi08g00659 Lsi-Chr8:14933121 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00133 K21995 - csv:101217068 880.552