Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00138 ATGGAACAGCACAATATTGTTGCTCTTATTCGCGATGTGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTAGTTTACAAAGCACGCGATCGCGTCACAAATGAAACTATTGCTTTGAAGAAGATCCGTTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCTATTCGTGAAATTTCACTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTACAAGATGTAGTGCATAGCGAGAAGCGTCTGTATCTGGTTTTTGAGTATCTGGATTTGGATTTGAAGAAGCATATGGACTCCTCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAATGTTCCTTTATCAAATTCTTCGTGGCATTGCATATTGTCATTCTCATAGAGTTCTTCACCGAGATCTAAAACCCCAAAATCTACTGATTGATCGTCGTACCAATGCCCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTGAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACAGAGCACCAGAAATATTACTTGGTTCCCGACATTATTCCACCCCCGTGGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGGTTAATCAGCGGCCATTGTTCCCTGGAGACTCTGAGATTGATGAACTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTGCTTTCCCCAAGTGGCCTCCCAAGCTTGACTTCACTCATTCTCTACTCGCACAGGACCTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGCATTGACCTTCTCTCTAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACTGCCCGGACTGCCCTTGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGA 945 43.92 MEQHNIVALIRDVYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKLDFTHSLLAQDLASVVPNLEAAGIDLLSKMLCLDPTKRVTARTALEHEYFKDVGFVP 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1583870 1589419 + Lsi04G001380.1 Lsi04g00138 660187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00138 314 SUPERFAMILY Protein kinase-like (PK-like) 7 310 IPR011009 -
Lsi04g00138 314 SMART serkin_6 14 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00138 314 CDD STKc_CDK1_CdkB_like 14 307 - -
Lsi04g00138 314 Gene3D Phosphorylase Kinase; domain 1 11 94 - -
Lsi04g00138 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Lsi04g00138 314 PANTHER - 12 311 - -
Lsi04g00138 314 Gene3D Transferase(Phosphotransferase) domain 1 96 312 - -
Lsi04g00138 314 ProSiteProfiles Protein kinase domain profile. 14 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00138 314 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Lsi04g00138 314 Pfam Protein kinase domain 14 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00138 314 PANTHER CELL DIVISION PROTEIN KINASE 12 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01935 Lsi-Chr1:24633242 Lsi04g00138 Lsi-Chr4:1583870 3.32E-45 dispersed
Lsi04g00138 Lsi-Chr4:1583870 Lsi04g02422 Lsi-Chr4:31327953 2.37E-112 dispersed
Lsi07g01139 Lsi-Chr7:16837804 Lsi04g00138 Lsi-Chr4:1583870 5.75E-66 dispersed
Lsi11g00111 Lsi-Chr11:1193734 Lsi04g00138 Lsi-Chr4:1583870 7.05E-55 dispersed
Lsi04g00138 Lsi-Chr4:1583870 Lsi08g01606 Lsi-Chr8:24018415 3.35E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83548 PF00069 Pkinase 3.10E-80 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00138 K02206 - csv:101217311 576.244