Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00159 ATGGGGGTGCCTGCAACTGCAACTTTGGGGGATGATTTTCTGAGAGAAAGAGCGGCCAAGATGAGAGAATCACTGCAAAAGAGCCAAACTATTACTGATAACGTCGTCACCATTCTCGGTTCCTTTGACCACCGTCTTTCTGCTCTCGAAACCGCCATGCGCCCTACTCAGATCAGAACCAATTCAATTCGTAAAGCTCACGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAGAGGGCCACATGAGGATTTGGAAAGTTATCTCGGGGCTATTGGTCAATTAAGAAACATTATCAAATTCTTTAGCAGCCACAAAGGTTTTAAGAGTAGCGAGGTAGTGCTTAACCAAGCAAATAATCTGCTTACAAAAGCCATCTCAAAGCTGGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGGTTTCTACATTTTTTTTTTTGGGAAGAATTCTGCATACATGATAAGAATGCCGTTATATTGACTCATGAATCTTCTTGGAACAAACCTGTGGAGCCTGAGCGTCTTTTTGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCATGATTCAGGTGGAAAGAATCACTCCTCAAATCATCATTCTGCACATCATGATAATAGCTTAGAGACTGCTGTCTACACACCTCCCACTCTCATACCACCACGTGTTCTACCACTGCTGCACGATTTGTCACAGCAAATGGTTCAAGCTGGTCATCAACAACAAATTTTAAAAGTCTACAGGTATGAAGCTTTGGATACACGTTCAGTCGTTCTGGAAGAAAGCCTACGGAAATTAGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTTAAACTGCTGTTTGCTGGTGAACGAAAAGTTTGCGATCAAATATTTGAAGGCTTTGAATCGCTTAGAGATCAATCATTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGTTATTCAGTTTTGGGGAGGCGATTGCAAAAAGCAAGAGGTCACCAGAAAAGTTGTTTGTACTTTTGGACATGTATGAAATTATGCGAGAGCTTCACTCTGAGATAGAGACAATTTTTAAGGGTAAAGCGTGTAATGAGATCAAGGAATCTGCATCGGGTTTGACCAAACGGCTTGCGCAGACTGCTAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAGGATGCCACAAAAACTGCGGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTACGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAGCTTTTTCAAGAATTTGAAGCTAGTGGTCAAACTAATTCGGAATTGGCCACTGTCACAATGCAAATAATGCAGGCTCTTCAATCTAATTTGGATGGAAAATCTAAGCATTACAGAGATCCTGCTTTGACTCACTTATTCCTCATGAACAACATTCACTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGGTCGTACAACAACATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATTCTGCAATGCCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCTGGTATAGATGGAGGAAATAGTAGCGGAGTTTCTAAGGCGCTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCCGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGGCCACTGATTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAGCCAGAGGATCTCGAAAGGATGCTGGGAGAATTTTTCGAAGGGAAGAACTTGAGTGAACCTAAGCGGTAG 2049 41.73 MGVPATATLGDDFLRERAAKMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILRGPHEDLESYLGAIGQLRNIIKFFSSHKGFKSSEVVLNQANNLLTKAISKLEDEFRQLLSSYRFLHFFFWEEFCIHDKNAVILTHESSWNKPVEPERLFDCLPKSLQPSSESPGHDSGGKNHSSNHHSAHHDNSLETAVYTPPTLIPPRVLPLLHDLSQQMVQAGHQQQILKVYRYEALDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACNEIKESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEASGQTNSELATVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRNAWSKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSKALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKR 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1783319 1790972 - Lsi04G001590.1 Lsi04g00159 660208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00159 682 Pfam Exo70 exocyst complex subunit 312 669 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi04g00159 682 MobiDBLite consensus disorder prediction 200 214 - -
Lsi04g00159 682 MobiDBLite consensus disorder prediction 199 227 - -
Lsi04g00159 682 Gene3D Exocyst complex component Exo70 78 682 - -
Lsi04g00159 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 183 678 IPR004140 GO:0000145|GO:0006887
Lsi04g00159 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 38 158 IPR004140 GO:0000145|GO:0006887
Lsi04g00159 682 SUPERFAMILY Cullin repeat-like 80 673 IPR016159 -
Lsi04g00159 682 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 38 158 - -
Lsi04g00159 682 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 183 678 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00159 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101206262 1169.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01185 Lsi-Chr1:10070994 Lsi04g00159 Lsi-Chr4:1783319 0 dispersed
Lsi04g00159 Lsi-Chr4:1783319 Lsi07g00662 Lsi-Chr7:7101373 7.06E-113 dispersed
Lsi04g00159 Lsi-Chr4:1783319 Lsi10g01339 Lsi-Chr10:17641018 4.14E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g774 . . . . . . . . . Cmo04g01515 . Cma18g00955 Car04g01504 Car18g00872 . . Cpe09g00367 . . . . . . . Cla05g02225 Cam05g2389 Cec05g2404 Cco05g2453 Clacu05g2379 Cmu05g2244 Cre05g2361 Cone1ag1422 Cone5ag0416 Cone11ag0966 . . . Chy10g01231 Cme10g00165 . . . . . . . Bma08g00906 . . . . . . . Cpe01g01290 . . . . . . . . . . . . . . . Lsi04g00159 Csa05g02705 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00159 . 12 682 EXO70 exocyst subunit family AT5G03540 75.3 4.8e-278 953.7
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G03540 68.7 1.2e-252 869.4
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G52340 77.4 8.7e-285 976.1
Lsi04g00159 . 14 682 EXO70 exocyst subunit family AT5G52340 70.2 1.5e-260 895.6
Lsi01g01185 . 145 612 EXO70 exocyst subunit family AT5G52350 60.2 5.1e-162 568.2
Lsi04g00159 . 183 682 EXO70 exocyst subunit family AT5G52350 57.9 5.4e-156 548.1
Lsi02g01250 . 1 626 EXO70 exocyst subunit family AT5G58430 67.5 4.2e-247 850.9
Lsi02g01250 . 1 625 EXO70 exocyst subunit family AT1G07000 52.1 5.3e-175 611.3
Lsi07g00009 . 77 663 EXO70 exocyst subunit family AT5G13150 54.5 2.2e-174 609.4
Lsi09g00909 . 106 718 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-190 661.4
Lsi07g00662 CCT,ECH 9 609 EXO70 exocyst subunit family AT1G72470 66.2 2.9e-216 748.4
Lsi07g00662 CCT,ECH 9 607 EXO70 exocyst subunit family AT1G54090 63.0 1.0e-208 723.4
Lsi07g00662 CCT,ECH 9 608 EXO70 exocyst subunit family AT3G14090 63.7 9.0e-218 753.4
Lsi02g00502 . 18 656 EXO70 exocyst subunit family AT5G50380 62.4 4.7e-228 787.7
Lsi06g00498 . 13 650 EXO70 exocyst subunit family AT5G50380 61.5 1.2e-223 773.1
Lsi08g01120 . 13 682 EXO70 exocyst subunit family AT4G31540 73.9 4.5e-295 1010.4
Lsi04g00846 . 58 611 EXO70 exocyst subunit family AT3G55150 51.3 1.3e-150 530.4
Lsi10g01339 . 33 610 EXO70 exocyst subunit family AT3G55150 50.1 3.7e-150 528.9
Lsi04g00846 . 31 609 EXO70 exocyst subunit family AT2G39380 51.1 5.5e-154 541.6
Lsi03g02079 . 26 630 EXO70 exocyst subunit family AT3G09520 56.1 7.3e-183 637.5
Lsi10g01339 . 23 604 EXO70 exocyst subunit family AT5G59730 50.1 1.1e-154 543.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00159 Lsi_Chr04 FPKM 1.661662 1.445104 17.067234 19.525698 21.025139 21.358133 21.011911 8.351717 8.33182 8.627782