Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00159 ATGGGGGTGCCTGCAACTGCAACTTTGGGGGATGATTTTCTGAGAGAAAGAGCGGCCAAGATGAGAGAATCACTGCAAAAGAGCCAAACTATTACTGATAACGTCGTCACCATTCTCGGTTCCTTTGACCACCGTCTTTCTGCTCTCGAAACCGCCATGCGCCCTACTCAGATCAGAACCAATTCAATTCGTAAAGCTCACGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAGAGGGCCACATGAGGATTTGGAAAGTTATCTCGGGGCTATTGGTCAATTAAGAAACATTATCAAATTCTTTAGCAGCCACAAAGGTTTTAAGAGTAGCGAGGTAGTGCTTAACCAAGCAAATAATCTGCTTACAAAAGCCATCTCAAAGCTGGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGGTTTCTACATTTTTTTTTTTGGGAAGAATTCTGCATACATGATAAGAATGCCGTTATATTGACTCATGAATCTTCTTGGAACAAACCTGTGGAGCCTGAGCGTCTTTTTGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCATGATTCAGGTGGAAAGAATCACTCCTCAAATCATCATTCTGCACATCATGATAATAGCTTAGAGACTGCTGTCTACACACCTCCCACTCTCATACCACCACGTGTTCTACCACTGCTGCACGATTTGTCACAGCAAATGGTTCAAGCTGGTCATCAACAACAAATTTTAAAAGTCTACAGGTATGAAGCTTTGGATACACGTTCAGTCGTTCTGGAAGAAAGCCTACGGAAATTAGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTTAAACTGCTGTTTGCTGGTGAACGAAAAGTTTGCGATCAAATATTTGAAGGCTTTGAATCGCTTAGAGATCAATCATTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGTTATTCAGTTTTGGGGAGGCGATTGCAAAAAGCAAGAGGTCACCAGAAAAGTTGTTTGTACTTTTGGACATGTATGAAATTATGCGAGAGCTTCACTCTGAGATAGAGACAATTTTTAAGGGTAAAGCGTGTAATGAGATCAAGGAATCTGCATCGGGTTTGACCAAACGGCTTGCGCAGACTGCTAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAGGATGCCACAAAAACTGCGGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTACGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAGCTTTTTCAAGAATTTGAAGCTAGTGGTCAAACTAATTCGGAATTGGCCACTGTCACAATGCAAATAATGCAGGCTCTTCAATCTAATTTGGATGGAAAATCTAAGCATTACAGAGATCCTGCTTTGACTCACTTATTCCTCATGAACAACATTCACTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGGTCGTACAACAACATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATTCTGCAATGCCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCTGGTATAGATGGAGGAAATAGTAGCGGAGTTTCTAAGGCGCTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCCGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGGCCACTGATTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAGCCAGAGGATCTCGAAAGGATGCTGGGAGAATTTTTCGAAGGGAAGAACTTGAGTGAACCTAAGCGGTAG 2049 41.73 MGVPATATLGDDFLRERAAKMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILRGPHEDLESYLGAIGQLRNIIKFFSSHKGFKSSEVVLNQANNLLTKAISKLEDEFRQLLSSYRFLHFFFWEEFCIHDKNAVILTHESSWNKPVEPERLFDCLPKSLQPSSESPGHDSGGKNHSSNHHSAHHDNSLETAVYTPPTLIPPRVLPLLHDLSQQMVQAGHQQQILKVYRYEALDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACNEIKESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEASGQTNSELATVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRNAWSKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSKALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKR 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1783319 1790972 - Lsi04G001590.1 Lsi04g00159 660208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00159 682 Pfam Exo70 exocyst complex subunit 312 669 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi04g00159 682 MobiDBLite consensus disorder prediction 200 214 - -
Lsi04g00159 682 MobiDBLite consensus disorder prediction 199 227 - -
Lsi04g00159 682 Gene3D Exocyst complex component Exo70 78 682 - -
Lsi04g00159 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 183 678 IPR004140 GO:0000145|GO:0006887
Lsi04g00159 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 38 158 IPR004140 GO:0000145|GO:0006887
Lsi04g00159 682 SUPERFAMILY Cullin repeat-like 80 673 IPR016159 -
Lsi04g00159 682 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 38 158 - -
Lsi04g00159 682 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 183 678 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01185 Lsi-Chr1:10070994 Lsi04g00159 Lsi-Chr4:1783319 0 dispersed
Lsi04g00159 Lsi-Chr4:1783319 Lsi07g00662 Lsi-Chr7:7101373 7.06E-113 dispersed
Lsi04g00159 Lsi-Chr4:1783319 Lsi10g01339 Lsi-Chr10:17641018 4.14E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00159 K07195 - csv:101206262 1169.84