Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00186 ATGAACTCAGTTCCGTTCATTTTCCTTCTCCTTCTCTCTCTCCGCTTCGCCGGAGCTTCCGATTCTCCTCCGCCGTCTACCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTTTGCCGCTCCATTCTCTCCTCCATCCGATTTTCCCCCTCCGATCCATACGGCTACGGAAAATTTTCCGTCAAAAAATGTCTCAAACAAGCGATCAAAATGTCGAGTGTAATCGGTGACTATCTCGATCGAGGACGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGAACGACTGCAGAGAGCTTTCCGATTTGAATGTGGAGTTTCTTCGGTCGATTGAGGGCGTATTGGAGGCGGCGGAGGGCGTCGATGAGGAACTGGTGGAGCGCGTTGAGAGTATTTTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGACGGATTAGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGCGCCGCTGTCGAGCGCCGGAGAGCTGTACAGTGTGTCATTGGGATTGGTTTCGAACTCGCTGTCGCGGCGGTGGAAGAAGCGGCGGCAGAAGGGAAATGGCGACGGAGGGAATTTTCCGGCGAGTGCACGGAGCAGAGAGCCATTGAACACGCTGATCAAGGGATTACATAAAATGGGATCATGCAACAATCAATCCACAAAGTGCTCAGGAAGGAAGCGTTTGTTAACTGATTTAGGCAGCACAGGGATTTTGATCAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCTTTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGGGAAGGATACTACGAAGAATACGTTGTCGTCCCCAAATTCAAAACCAATGTAATGCTCATCGGAGACGGCATTAATCAAACCGTCATCACCGGGAACCATAATGTTGTCGATGGTTGGACGACATATAACTCTTCTACCTTCAATATGACATTCAAGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTAGCAGTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTTGAGGGATATCAAGACACTCTTTATGTACATTCCCTAAGACAATTCTACAGAGAATGTGACATTTATGGCACTGTAGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAACAATGCAATCTCTATGCCAGAAAGCCACTCCCCAACCAAAAAAATGCCTTCACCGCACAAGGTCGTTCCGATCCTAATCAAAACACAGGCATCTCGATCCACAACTGCACCGTCAAGGCTGCGCCTGACTGGGTGATGGATGATCCGAATGCAACGACGACGACGACGAACTATCTCGGTCGGCCGTGGAAACAGTACTCAAGGACAGTGTATATGCAGTCTTATATCGGGGATTTGATAAGTCCAGTGGGGTGGTTGGAGTGGAATGGAACAGTAGGATTGGAGACATTGTATTATGGGGAGTTTGAGAATTATGGAGCAGGAGCTAACACAAGCTTGAGGGTAAATTGGCCTGGATATAGCTTGATGAATCTTACACAGGCTATGAATTTTACTGTCTATAATTTTACTATGGGAGATACTTGGCTGCCTTATACTGATATCCCTTTCTCTGGAGGTTTGCTAATTAAGTGA 1680 47.68 MNSVPFIFLLLLSLRFAGASDSPPPSTALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVIGDYLDRGRDSRLNQREAGALNDCRELSDLNVEFLRSIEGVLEAAEGVDEELVERVESILSAIVTNGQTCIDGLVESRSSLGNALSAPLSSAGELYSVSLGLVSNSLSRRWKKRRQKGNGDGGNFPASARSREPLNTLIKGLHKMGSCNNQSTKCSGRKRLLTDLGSTGILINNTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVREGYYEEYVVVPKFKTNVMLIGDGINQTVITGNHNVVDGWTTYNSSTFNMTFKNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRSDPNQNTGISIHNCTVKAAPDWVMDDPNATTTTTNYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTVGLETLYYGEFENYGAGANTSLRVNWPGYSLMNLTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIK 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1991203 1998140 - Lsi04G001860.1 Lsi04g00186 660235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00186 559 SUPERFAMILY Pectin lyase-like 245 555 IPR011050 -
Lsi04g00186 559 Pfam Pectinesterase 250 542 IPR000070 GO:0030599|GO:0042545
Lsi04g00186 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
Lsi04g00186 559 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 6 556 - -
Lsi04g00186 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Lsi04g00186 559 PANTHER PECTINESTERASE 6 556 - -
Lsi04g00186 559 SMART PMEI_2 21 176 IPR006501 GO:0004857
Lsi04g00186 559 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Lsi04g00186 559 Gene3D - 246 558 IPR012334 -
Lsi04g00186 559 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857
Lsi04g00186 559 CDD PMEI-like_3 28 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00186 Lsi-Chr4:1991203 Lsi02g02434 Lsi-Chr2:30889968 2.18E-138 dispersed
Lsi04g02274 Lsi-Chr4:29762910 Lsi04g00186 Lsi-Chr4:1991203 6.81E-161 transposed
Lsi10g00656 Lsi-Chr10:9123500 Lsi04g00186 Lsi-Chr4:1991203 1.32E-143 transposed
Lsi04g00186 Lsi-Chr4:1991203 Lsi09g00673 Lsi-Chr9:7603919 1.10E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00186 K01051 - csv:101206112 1021.15