Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00187 ATGGATGGAAAGGCAGCAAAGAGAAGGAATCTGATTGGTAGCATGGCTGCACCTACAGCCAAGTTACCAAAATGCTTCTCCAAATTTCCCCCTCTGTACATTCCAATCCAATTCAAACGCCATTTTATTACTGCATTTCATTTCCACTTCCTTAATTTCCCACTCCTGATCTTCTTCCTTCGAAATCTCAATTCTCTCCGCGCTCTGCCGCCGCCCTCTGCCATGAGAATAATCTCTCCGCTTTCTGCCTCTTCTTCTTCTTCTTCTTCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAACCAAACGGCGGAGGAGGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCCAATGGAATCAACAACGCCGCCGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGCACCGATGGACCGGCCGTTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAACAGCATTCAGAACAAAAAAGGAAGGCAAGCCCTGATTTTGTTTTGCTGACTGTGTCTTTGGGCTCCCCTGTCATCGCCAACGTTCATTTTCCACTTTTGTCGCTGCTCAGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGGTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTTGGGAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAATACAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAACAAATCATCAGTTCTTCAAGCAGCAGAGCAAGCAGACGATCCCAATTATTCTCCTGCTTCTTCTGAGGGAGAAGTAGTACAACAACAACAGGATCAACAACAACAACAAACTACATTCTCAAGCCCACCCGACCTACAGTTCTCGATCGAGAACAACCCGGGAATGGCTGTGATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAAGTCCCTGACCTCCCACTCGAGAAATCAAGCGAATTGGCCGACTTATACTTCGACGAGATTGGGTTCGAGGACGACATTGGATTGATATTCGAAGCGAGCTTAGAGAACAAGAACTGTGAAGGCAATAATAATAATAATAATAATAATGATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1557 47.01 MDGKAAKRRNLIGSMAAPTAKLPKCFSKFPPLYIPIQFKRHFITAFHFHFLNFPLLIFFLRNLNSLRALPPPSAMRIISPLSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRTKRRRRNQDETKCQIHNHNANGINNAAASSARRSSIYRGAPMDRPFRSSSLGQEFMEQHSEQKRKASPDFVLLTVSLGSPVIANVHFPLLSLLRAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSVLQAAEQADDPNYSPASSEGEVVQQQQDQQQQQTTFSSPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFDEIGFEDDIGLIFEASLENKNCEGNNNNNNNNDNNNVGKMEVNCSEKIRLFSTTSPSSSSITTSVSCEFRV 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2003090 2008870 - Lsi04G001870.1 Lsi04g00187 660236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00187 518 MobiDBLite consensus disorder prediction 82 114 - -
Lsi04g00187 518 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 216 496 - -
Lsi04g00187 518 CDD AP2 280 341 IPR001471 GO:0003700|GO:0006355
Lsi04g00187 518 MobiDBLite consensus disorder prediction 82 154 - -
Lsi04g00187 518 MobiDBLite consensus disorder prediction 354 397 - -
Lsi04g00187 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 216 496 - -
Lsi04g00187 518 MobiDBLite consensus disorder prediction 354 399 - -
Lsi04g00187 518 SUPERFAMILY DNA-binding domain 215 247 IPR016177 GO:0003677
Lsi04g00187 518 SMART rav1_2 281 345 IPR001471 GO:0003700|GO:0006355
Lsi04g00187 518 Pfam AP2 domain 280 331 IPR001471 GO:0003700|GO:0006355
Lsi04g00187 518 Gene3D AP2/ERF domain 280 341 IPR036955 GO:0003700|GO:0006355
Lsi04g00187 518 Gene3D AP2/ERF domain 212 247 IPR036955 GO:0003700|GO:0006355
Lsi04g00187 518 ProSiteProfiles AP2/ERF domain profile. 158 245 IPR001471 GO:0003700|GO:0006355
Lsi04g00187 518 SUPERFAMILY DNA-binding domain 280 341 IPR016177 GO:0003677
Lsi04g00187 518 ProSiteProfiles AP2/ERF domain profile. 281 339 IPR001471 GO:0003700|GO:0006355
Lsi04g00187 518 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00187 Lsi-Chr4:2003090 Lsi06g01180 Lsi-Chr6:22096693 1.36E-12 dispersed
Lsi04g00187 Lsi-Chr4:2003090 Lsi01g00869 Lsi-Chr1:7000981 5.19E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25111 PF00847 AP2 8.60E-12 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00187 - - csv:101206349 557.37