Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00196 ATGGCAGAGCATTACGAGAAAGTAATCGGAATCGATGTAAGCAAATCGCAATTAGAATGCGCAATGAAGCACGAAAGAGTTCAATACCTCCACTTACCAGCCTCGATGAGCGAAGATGAGATGGTGAAATCAATCGGCGCAGAGAACACCGTAGATCTAATCGTCTCTGCCGAAGCCGTGCACTGGTTCGATCTGCCGAAATTCTACGCCGTCGCCTCTCGTCTTCTCCGAAAACGCGGCGGAATCATCGCCGTTTGGGGATATTACTACATATCCTTGAACGAAGCGTTCGACGCTGCGATGCATCGATTGACGGAAGCGACGCTGCCATTTTGGGATGAGAAAGTGAAGGAATACGTACTGAAAGGTTACAGGACGCTTCCGTTTCCGTTCGAGAGCGTGGGGATTGGATCGGAAGGGAAGCCGGAGGCATTGGAGATGGAGCAGGAGTTTTCGTTTGAAGGATTGTTGAAGTATTTGAAATCGATGGGGCCAGTGATTGAGGCGAAGAAGAACGGCGTTGATGTAATGTGTGAAGAAATGGTTAAGGAGCTGAGAGATGCTTGGGGAGGAGGAGATTTTGTTAGAACCGTCGTCTATAAATGCTTTATGATCGTCGGAAAAATAATTTGGAGAGTTATGACTTGGGCCATGCGGAAGGGTTCACAAATGGCTGTATATCCGCGAACAATTTCTTGGATTGCGATTTCAGTTGGAGGATTGGCTATGTTCCTAATCTTTGGATCTTGGTTCTTAGTCTCCTACCCAATAGGTCCCATAATGCGCGGGTACTTCTACGGTGTTAATAGTTCAAAGGATTTGGATTTCGTAATTTCTCTAGGAAATCAAAGTGCTACTGTTCCTGCCCATGACATCAATTTAGATCTAGTTGCAAAAAAATCCTCTTCAGATGAGGGTATAGATGACAGGAAATTTGAATCTCAGTCAAATTCACCTCCTCAAAGTAGTTCGAATAGACCTGCGGATGGTGTGAGTTCAGACGTAATTGATAAGGATTTGTTGCGTAAGTCCAAATCACCAGATGCCACGAAATCAAGTAGTCGGTCAGTTGTTCCAGAAACCAAGGAGAAGAGAGATGAAGGGACAATTCCTTCAGAATTGTCTTCACAAGATGAGTCAGAGGCTTCTATTCTTACATCTAAAGTTGAACATTCTGAAAATGGTGGATCTGTTTCCAAAGGTTCTATAAGCAATTCCAATGATACAGATATGGGTTCTAAAAATAATAGTGTAAAATCAGATGGCTTACCAGATCCAGATCCTCTGCCAACTGATGGGAGCACGACATCAGATTTAGGCTGTGATTTGTACCATGGAAGTTGGGTTTATGATTCTGCAGGACCATTGTATAAAAATAATTCATGCCCTGTCCTGTCACAGATGCAGAACTGCCAGGGCAATGGGAGACCAGACAGGGAGTATGAGAATTGGCGATGGAAGCCCTCTCAATGTAACCTCCCAAGATTTGATGCTAAGAAATTTTTGAAGTTGATGAGTGGGAAGACACTTGCTTTTATTGGTGACTCAGTTGCTCGAAACCAAATGGAGTCATTATTGTGCGCTTTGTGGCAGGTTGAAGTTCCTAAAAACAGGGGAAATAAGAAAATGCAAAGATATTATTTCAGGTCAACCTCTGTGATGATTGTTCGTATATGGTCATCATGGCTTGTGAAGCAAACAAATGAACCTTTAGATTTTGCTTCAGATGATGTTGTCAAACTTCACCTTGATGCTCCTGATGATAATTTCATGGAATTTATTCCAACTTTTGATGTCATTGTCATTTCATCTGGTCACTGGTTTGCCAAGCGGTCGGTTTACGTTCTAAATAATGAGATTGTAGGAGGACAGCTGTGGTGGCCTGATAAATCTCGTCATATGAAGGTTAACAACATTGAGGCTTTTCGAATTTCTGTAGAAACAATTCTTACTTCTCTTGCCACGAGCCCTAATTACACGGGACTCACGATTGTGCGTTCTTATTCTCCTGATCACTATGAGGGTGGGGCCTGGAATACTGGTGGATCCTGCACTGGAAAGGAAAGGCCTCTCGCCATAGGAGAACGAGTGGAAAATAAATTCACTAACATCATGCATGATAATCAGGTAGCTGGTTTCGATGCAGCAATTAAGAAGTTGACAAATAAATCTAGGCTAAAACTGATGGACATTACAGAAGCTTTTGAGTATCGCCACGACGGGCATCCAGGGCCTTACAGAAATACTGACCCGAATAAACTCACCAAACGTGGGCCAGATGGAAAACCACCACCACAGGATTGCTTACACTGGTGCATGCCAGGTCCTGTAGATACCTGGAATGAGCTTGTTCTTGAACTTATAAGGAGAGATTTTGAGGCTCGTAATTTCCACTGGGTGAAGAGTGAGGACCTGAAAGCTTCCGGTGCTGCGCGAGTGAGCTTCTTACCAATACCCCATACACCAATCTTATCTTCTATGTTACACGTTCTCTCGTCTGTTACGAGAATCCGGCCAATTTCTTTCCGAACAAGCGACGCCGCCGTCGGAATCTCTGATAGCCGGAGGGGAATGGTGAAATTTGCCCGGAAAAGAGTGGGCCAGACGGTCATGAGCCTTGGCGGGAACGGTGTTGGCCAAGTTGTGGTCGCCGTGGCGGTGGCTCTCCTCGTCCGTCTTTTCTCTGGACCTGAACCTGCTCTTCCGCCGGAATACGACATCGAGCTCGAGGACGGGGAGAAGGAAGATGGAGACATTGAAGTCGGTGAAGAAGCTCCAGCCTCCGGGAAAGTTACGCCGGTGAAAATCCGGTGGTGCAATATCTCCTGCTCTCTCTCTGATAAATCCTCCAAATCAGTGAGATGGCTGCTTAAGAATGTTAGCGGAGAAGCGAAACCAGGAAGATTATTGGCAATAATGGGACCGTCAGGTGCAGGAAAAACAACGTTGCTCAATATTCTGGCCGGGCAGCTAGCGGCTTCACCACGGTTACATCTCTCAGGCATTATAGATTTCAATGGAAAGGCTGATTCAAATAAGATAGCTTACAGGTTGGCATATGTGAGACAGGAGGACCTCTTTTTCTCACAGCTAACTGTGCGAGAGACACTGAAGCTTGCTGCTGAACTTCAGCTTACTGAGATATCTTCTGTAGAGGAGAGGGAAGAATATGTTAACAATCTGCTCTTGAAACTAGGTTTGGTAAACTGTGCTGAATCATGTGTTGGTGATGAAAGAGTTCGTGGGATCAGTGGGGGTGAAAAGAAACGCTTGTCTCTTGCTTGTGAACTGATTGCCAGCCCATCTGTTATATTTGCCGATGAACCTACAACAGGACTTGATGCATTCCAGGCTGAAAAAGTAGTGGAGACACTTCAACAACTTGCGAAGGATGGGCACACTGTTATCTGCTCCATACATCAACCAAGAGGTTCTGTGTATAGCAAATTTGATGATATCGTATTGTTGACAGAGGGTGCTCTAGTATATGCTGGTCCTGCTCACGAGGAACCTTTGGAATACTTCTCTAAATTTGGGTTGTATAATTGCCCGGACCACGTGAATCCAGCTGAATTTCTGGCAGATCTTATATCAATTGACTATAGTTCTGCAGATAGCGTGTACTTCTCTCAGAAGAGGATTTGCGGTCTTGTTGAATCATTCTCACGATACTCTTCAACAATTTTGTATGTAAACCCGATCGAGAAAAGGCAGGTCTTGGCTGGTAAAGAATTCAGGAAAAGTAGGCTTTTGAAGAAAGGAGGTTGGTGGAGGCAATTCTGCTTGCTCCTCAAGCGTGCATGGATGCAGGCTTCTCGGGATGGACCAACAAATAAGGTTCGAGCACGAATGTCCATTGCATCAGCTATCATATTTGGTTCAGTCTTCTGGAGAATGGGAAGATCTCAAACATCAATCCAGGATAGGATGGGTTTGCTTCAGGTTGCAGCAATCAACACTGCAATGGCTGCTCTCACCAAGACTGTGGGTGTTTTTCCAAAGGAGCGTGCAATTGTTGACAGGGAGCGTGCAAAGGGATCTTATACATTAGGCCCATATTTGCTTTCTAAATTGTTGGCCGAGATTCCAATTGGAGCTGCTTTTCCACTGGTATTTGGGTCTATTTTGTACCCAATGGCTCGTCTTCACCCAACCGTATCAAGATTTGGGAAGTTCTGCAGTATTGTCACGGTTGAATCTTTTGCTGCGTCTGCTATGGGGCTCACTGTAGGGGCTATGGTTCCTAGCACAGAAGCAGCAATGGCAGTGGGACCCTCACTCATGACAGCACTCGAGCGACTCTCTTTTGGTCGAAGCCGTATTAGGGATACATTGATAGCTCAAAGTAGGATACTTTTGTTCTGGTATTATACCACATACCTTCTCCTAGAAAAAAACAAGCCCAAATACCAGCAGCTTGAGCCACCGCCTCTTGACGAAATACAGCCCAATCTACAAATCGAAACCTTTGACAATGACAACTTGGACAAAACCCAACGCGAGGGAGATCTACAAATCAAAACCTTTGATAATGACAACTTCGACAAAAACTTGGACAAAACCCAACCTGAGGGAGATCTACAAATGGAAACCTCTGACAATGAAAACTTGGACGAAAACGTGGACAAAACCCAACCTGAGGGAGATCTACAAATGGAAACCTCTGACAATGACAACATGGAGAAACCCCAACCTGAGGAACCTCCATCTCTTGATCAAGTTGAACCGAAGGATGACGATATTGAAACACCCCAAATCGATCAAATCCGACCATTTATTCTAGAAGGTTTTTGGCTCAATGGCCATGCAAAGAAACAGAAGGTTGCATTGCATGGGAAGAAGGATGAGGAGTTGAGAGATTTATAA 4866 44.78 MAEHYEKVIGIDVSKSQLECAMKHERVQYLHLPASMSEDEMVKSIGAENTVDLIVSAEAVHWFDLPKFYAVASRLLRKRGGIIAVWGYYYISLNEAFDAAMHRLTEATLPFWDEKVKEYVLKGYRTLPFPFESVGIGSEGKPEALEMEQEFSFEGLLKYLKSMGPVIEAKKNGVDVMCEEMVKELRDAWGGGDFVRTVVYKCFMIVGKIIWRVMTWAMRKGSQMAVYPRTISWIAISVGGLAMFLIFGSWFLVSYPIGPIMRGYFYGVNSSKDLDFVISLGNQSATVPAHDINLDLVAKKSSSDEGIDDRKFESQSNSPPQSSSNRPADGVSSDVIDKDLLRKSKSPDATKSSSRSVVPETKEKRDEGTIPSELSSQDESEASILTSKVEHSENGGSVSKGSISNSNDTDMGSKNNSVKSDGLPDPDPLPTDGSTTSDLGCDLYHGSWVYDSAGPLYKNNSCPVLSQMQNCQGNGRPDREYENWRWKPSQCNLPRFDAKKFLKLMSGKTLAFIGDSVARNQMESLLCALWQVEVPKNRGNKKMQRYYFRSTSVMIVRIWSSWLVKQTNEPLDFASDDVVKLHLDAPDDNFMEFIPTFDVIVISSGHWFAKRSVYVLNNEIVGGQLWWPDKSRHMKVNNIEAFRISVETILTSLATSPNYTGLTIVRSYSPDHYEGGAWNTGGSCTGKERPLAIGERVENKFTNIMHDNQVAGFDAAIKKLTNKSRLKLMDITEAFEYRHDGHPGPYRNTDPNKLTKRGPDGKPPPQDCLHWCMPGPVDTWNELVLELIRRDFEARNFHWVKSEDLKASGAARVSFLPIPHTPILSSMLHVLSSVTRIRPISFRTSDAAVGISDSRRGMVKFARKRVGQTVMSLGGNGVGQVVVAVAVALLVRLFSGPEPALPPEYDIELEDGEKEDGDIEVGEEAPASGKVTPVKIRWCNISCSLSDKSSKSVRWLLKNVSGEAKPGRLLAIMGPSGAGKTTLLNILAGQLAASPRLHLSGIIDFNGKADSNKIAYRLAYVRQEDLFFSQLTVRETLKLAAELQLTEISSVEEREEYVNNLLLKLGLVNCAESCVGDERVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVVETLQQLAKDGHTVICSIHQPRGSVYSKFDDIVLLTEGALVYAGPAHEEPLEYFSKFGLYNCPDHVNPAEFLADLISIDYSSADSVYFSQKRICGLVESFSRYSSTILYVNPIEKRQVLAGKEFRKSRLLKKGGWWRQFCLLLKRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYTLGPYLLSKLLAEIPIGAAFPLVFGSILYPMARLHPTVSRFGKFCSIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTALERLSFGRSRIRDTLIAQSRILLFWYYTTYLLLEKNKPKYQQLEPPPLDEIQPNLQIETFDNDNLDKTQREGDLQIKTFDNDNFDKNLDKTQPEGDLQMETSDNENLDENVDKTQPEGDLQMETSDNDNMEKPQPEEPPSLDQVEPKDDDIETPQIDQIRPFILEGFWLNGHAKKQKVALHGKKDEELRDL 1621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2068678 2089134 + Lsi04G001960.1 Lsi04g00196 660245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00196 1621 Pfam ABC transporter 957 1110 IPR003439 GO:0005524
Lsi04g00196 1621 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 1430 1479 - -
Lsi04g00196 1621 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1430 1479 - -
Lsi04g00196 1621 PANTHER ATP-BINDING CASSETTE TRANSPORTER 858 1430 - -
Lsi04g00196 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1169 IPR027417 -
Lsi04g00196 1621 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 138 IPR029063 -
Lsi04g00196 1621 CDD AdoMet_MTases 6 90 - -
Lsi04g00196 1621 Pfam ABC-2 type transporter 1140 1198 IPR043926 GO:0140359
Lsi04g00196 1621 SMART AAA_5 966 1160 IPR003593 -
Lsi04g00196 1621 Pfam Methyltransferase domain 2 83 IPR013216 GO:0008168
Lsi04g00196 1621 MobiDBLite consensus disorder prediction 313 330 - -
Lsi04g00196 1621 MobiDBLite consensus disorder prediction 357 372 - -
Lsi04g00196 1621 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 858 1430 - -
Lsi04g00196 1621 CDD ABCG_EPDR 933 1165 - -
Lsi04g00196 1621 MobiDBLite consensus disorder prediction 305 435 - -
Lsi04g00196 1621 MobiDBLite consensus disorder prediction 739 762 - -
Lsi04g00196 1621 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 493 786 IPR026057 GO:0016740
Lsi04g00196 1621 MobiDBLite consensus disorder prediction 1506 1582 - -
Lsi04g00196 1621 MobiDBLite consensus disorder prediction 1506 1523 - -
Lsi04g00196 1621 Gene3D - 928 1173 IPR027417 -
Lsi04g00196 1621 MobiDBLite consensus disorder prediction 332 349 - -
Lsi04g00196 1621 Pfam ABC-2 type transporter 1258 1431 IPR013525 GO:0016020|GO:0140359
Lsi04g00196 1621 Gene3D Vaccinia Virus protein VP39 1 208 IPR029063 -
Lsi04g00196 1621 MobiDBLite consensus disorder prediction 373 420 - -
Lsi04g00196 1621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 936 1183 IPR003439 GO:0005524
Lsi04g00196 1621 Pfam PMR5 N terminal Domain 441 492 IPR025846 -
Lsi04g00196 1621 ProSitePatterns ABC transporters family signature. 1083 1097 IPR017871 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00196 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101211066 1084.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01794 Lsi-Chr1:17488508 Lsi04g00196 Lsi-Chr4:2068678 2.43E-36 dispersed
Lsi04g00196 Lsi-Chr4:2068678 Lsi09g00186 Lsi-Chr9:1935097 3.86E-73 dispersed
Lsi11g00150 Lsi-Chr11:1662823 Lsi04g00196 Lsi-Chr4:2068678 1.50E-45 dispersed
Lsi04g00196 Lsi-Chr4:2068678 Lsi03g01420 Lsi-Chr3:25155111 2.18E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g402 . . . . . . . . Cmo04g01536 Cmo18g00981 . . Car04g01524 Car18g00896 . Cpe09g00340 Cpe01g01308 Bhi07g01235 . . . Hepe01g1135 . . Cla05g02253 Cam05g2419 Cec05g2436 Cco05g2481 Clacu05g2408 Cmu05g2274 Cre05g2392 Cone13ag0777 Cone19ag0780 . . Lsi04g00196 Csa05g02673 Chy10g01202 Cme10g00198 . Blo11g00741 Bda07g01446 . Bpe11g01615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007996 0 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 4 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00196 Lsi_Chr04 FPKM 0.868766 0.467171 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0