Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00198 ATGAGTTTTATGTGTTATGCGGTCTCTGTACCGGGATTTTCTTTGCCGATGAAGGGTTTCCCTGCTTCGTTTTTGCTTCTATTTTTGCTGGGTTTTGGCTTTGCCTCAGGATGTGCTGACGAAAGATTCTGGCAAATTCATCTTAGGTTTGGACATCCTTCTCTGTTGTTTGATTCGATCATATATTCTCATTTGGTTGTGATTTTTCTTGTGAATTTGATGGATGGATTCTGTTTCTTATGTTGGGTCTGTTTTGTTGTTGACAATGATGGCGGGAAAATTATCGCAGTTTTAAGTTATAAATGGGTGCTCTCGTCTTACTTAAAGGAGGTTAAAATTGTTTGTGGCATATTCAGTCGCTTTATTTTGGGTGTCGTGAAATCTCCTTCTCTTGTGTATTCTAAGTGGCCACATTGTGCAGAATATTTATTCCCTGTTTGCTGGATTTTGTTTTGGTGGTCGGTTTCTTCTGGCAAATGCAAACCGATTGTTGGTTGGAAACGAAAAGTTTCTCTTTCTTTTTTTTCTATGGAGCTTATAGAGCTTCTGTCTTTAAGACAAGAAAACTTGGGTCCTTGGAAGAACGAGATACTGGAGACTGCTGAGGGCCCAGGATCTGCAAATAACAGCTCTCAAAGCCCTCTTGTATTGGCAGCGAATAGAACAAAGCGGCCAGATATTCTTCATGGGTTTAGCGTGTATGAAGGTGGATGGGATATTGCCAATCCGAATTACTGGGCTTCTGTTGGGTTTACTGGTGCAACTGGTTTCTTTCTTTCTATCTTCTGGTTCATTTCCTTTGGCATTGCTCTTCTTATTCATCGTTGCTGTGGATGGAAGTTAAGCCTTAAAGGCGAAGAATCAAAGACTTCACAGTGGATTTGCCTAGCATTACTTGTTGTTTTCACATCTGCTGCAACCATTGGCTGCATACTTCTATGTATTGGACAGAATAATTTTTACAATGAAGGTTTGCATACTTTGAAGTATGTTGTAAACCAGTCGGACTACACTGTGCACACGCTTAAAAATGTTACAGAATATCTTTCACTTGCAAAGACCATTAGTGTGGCCCAGGTGTTCCTTCCATCTGACGTAATGACCAACATTGATGAGTTAAATGTGGATTTAAATACTGCTGCAAATACAGTGGCAGATAAGACAAGTGTAAATTCTCATAAAATAAGAAAAGTTTTCACTGCTATATTAATAATCAGTGGTTGGCTACTTGTGACATTTACATTTGTTCTTTGTGGATTGTTTGTAATTCTTGACAATGCTGTTTCTGATACATGTATGGCAATGGAAGAATGGGTGGATAATCCACATGCAGAAACGGCTCTTAGCAACATCCTTCCATGTGTTGACCATAAAACCACAAACCAGACACTGATCCAAAGCAAAAAGATTGTCAACGACATCGTGAGTGTCGTCGATCAATTCGTCTACAACTTTGCCAATGCAAATCCACCCCCGGGTTCTCCCAACTACTGCAACCAGTCAGGACCTCCAATGCCAGCTCTCTGTTACCCATACAACTCTCAGCTGGAAGAAAGTAGATGCGGCGATAACGACGTGACTATTGAAAATGCATCAACAGTGTGGCAGAAGTTCATGTGTCAAGTATCGGAATCTGGGCTGTGCATCACGGTTGGAAGGGTCTCACCGGACATCCATTCCCAGATGGTGGCTGCAGTGAATGAGAGTTATGCCCTTCAGCATTACACTCCCCCTTTGCTGAGCTTCCAGAATTGCAATTTTGTCAGGGAAACATTTCACAACATCACCACAGCTTACTGCCCTCATCTGCATCGTCATCTTAAGATCGTGAATGTTGGACTTGCAATGATTTCAGTAGGAATATTGCTATGTCTGTTGCTATGGATACTATATGCAAACCACCCCCAAAGGGAGGATGTGTCTGTGAAGCTATCCTTTTCGCTAAACCGCAGGAGAAATGGTAACGAAAATACGAATAATAATAGCAGCGGAAATGACGAATCCACAACATCAAGCATCAGAAGCATCAGAAGTGGAGTTTAG 2043 41.36 MSFMCYAVSVPGFSLPMKGFPASFLLLFLLGFGFASGCADERFWQIHLRFGHPSLLFDSIIYSHLVVIFLVNLMDGFCFLCWVCFVVDNDGGKIIAVLSYKWVLSSYLKEVKIVCGIFSRFILGVVKSPSLVYSKWPHCAEYLFPVCWILFWWSVSSGKCKPIVGWKRKVSLSFFSMELIELLSLRQENLGPWKNEILETAEGPGSANNSSQSPLVLAANRTKRPDILHGFSVYEGGWDIANPNYWASVGFTGATGFFLSIFWFISFGIALLIHRCCGWKLSLKGEESKTSQWICLALLVVFTSAATIGCILLCIGQNNFYNEGLHTLKYVVNQSDYTVHTLKNVTEYLSLAKTISVAQVFLPSDVMTNIDELNVDLNTAANTVADKTSVNSHKIRKVFTAILIISGWLLVTFTFVLCGLFVILDNAVSDTCMAMEEWVDNPHAETALSNILPCVDHKTTNQTLIQSKKIVNDIVSVVDQFVYNFANANPPPGSPNYCNQSGPPMPALCYPYNSQLEESRCGDNDVTIENASTVWQKFMCQVSESGLCITVGRVSPDIHSQMVAAVNESYALQHYTPPLLSFQNCNFVRETFHNITTAYCPHLHRHLKIVNVGLAMISVGILLCLLLWILYANHPQREDVSVKLSFSLNRRRNGNENTNNNSSGNDESTTSSIRSIRSGV 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2109047 2113472 + Lsi04G001980.1 Lsi04g00198 660247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00198 680 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 184 402 IPR040283 -
Lsi04g00198 680 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 402 662 IPR040283 -
Lsi04g00198 680 PANTHER TRANSMEMBRANE PROTEIN 402 662 - -
Lsi04g00198 680 PANTHER TRANSMEMBRANE PROTEIN 184 402 - -
Lsi04g00198 680 MobiDBLite consensus disorder prediction 651 680 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00198 - - - csv:101211567 858.211
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00198 Lsi-Chr4:2109047 Lsi04g02106 Lsi-Chr4:28213845 5.26E-131 dispersed
Lsi04g00198 Lsi-Chr4:2109047 Lsi06g01065 Lsi-Chr6:20879323 1.57E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g400 . . . . . . . Bma15g00062 Cmo04g01539 Cmo18g00985 . Cma18g00979 Car04g01526 Car18g00899 Sed06g1916 Cpe09g00338 Cpe01g01310 Bhi07g01238 Tan04g0768 Cmetu10g1517 Lac13g0559 Hepe01g1139 . . Cla05g02255 Cam05g2422 Cec05g2439 Cco05g2484 Clacu05g2411 Cmu05g2278 Cre05g2396 Cone13ag0782 Cone19ag0785 . . Lsi04g00198 Csa05g02671 Chy10g01200 Cme10g00201 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007694 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00198 Lsi_Chr04 FPKM 10.853783 12.036159 10.92659 11.548444 12.912457 12.445331 12.265057 14.369568 13.50896 14.117812