Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00202 ATGGCTTCCGCTCGTCTCCCGTCGTTCCATTTCCACGGTCCGTCTTCTCGGCGGCGGAGACCATCCGACCACCGCAGAGCTCCGAGATGCCACGGCGGCGTCAGCGATGAAGAGAACCAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAGCGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTCCGGTTCCGGCACGGCGCGAAGGACTCGAATTCGACAATGGCTGTAAGTATTTGTCGATGAGCGACGGCACGAAGTTCGATCGTGATTTTGATTGCAAGATTTTGAAGAATTTTGCCCTAATTTCAGAGTGTTTGGAGGTGGTGACTACGGTTGGCGGTGCAGTTGGGCTTGTTTTTGTGGGTGGATCTTTAGGCATCTGTTTGGTTTCTCTTTTGCTTAACGATCTGCCAACACAGTATTTGCCTGCCTCCCGTCTGGTGGTCTTTGCTCCGAGAATTGTCGCCGTCGGCCGATTGACGGAGCAGATGTGTAGCGAAGCCATGGAAGACATATTCGGAAAAGCCACAGCTGCGGTCGAAGAGCTTTATCACATCAGAGACACTTTTTTTTCTGTAAATCCCGATGACAAAACTTCCAAATTACGGGAGCTATCGGATCTTGCTCTCAAGATCCTCGATTCCATTCCTCCAGGTACTGAAAATGAGGCAAAACTTGTAGAGGAAAGTATTCAACATGCAAAAGAAGCAGTTACTTTGGATGTGAAGGATGGAAACTCTTGGTATAATCTAGGAAATGCATGCCTTACAAGTTTTTTTGTTACTGGAGCATGGGATCATAGTAAGCTTCTGCAATCTTTGAAGGCATATCAAAATGCGGTTAACAAATATCTGGAGAACTATGACAGGGCCCTTAGTGGATTTGAGGCTGCTGCTTTGAAGGATCCTAGTCTTGGTGCTACTAGGGAGGTACACAAGATGGTGAATCTTCTTGACAAATTGGATAACATGTTGAAGGCACATGCTAAAACACGAAGAGGTGCGTCTTTGCCATCATCAGTGGATGCTGTTAATTCGAACTTCTCATACAAGAGAGCCACTGTAGACCAGCTGTCAGAGGGTCTGAACAAAACAGTTGCAGTAACTGGGAAGGTGTTGTCCTTCATTAAGCATGATAGTCTTGCCCCACTATATTATTTGGTGTGTGATTCAAACCAAACATGCTTTGTTTTATCGTTGTATGGTATGCGGAATGATACGGAAAAAAAAATGTCCTCACAGGTTAAGGAAGGAGATCAGATAACACTACCGGAACCGTATTATCGCAATCTTGATTTTTCTTGGAAGGGAAAGCATTACCAGTTCAAATCAATCCGAGTCGATTTCTTAGAACAAGTTATTGTCAATGGAAAAGCTCCCTCTGCTCACCAGGCAGTCCAGGCATCAATATATGCCCAACACAAACCCTGA 1443 45.88 MASARLPSFHFHGPSSRRRRPSDHRRAPRCHGGVSDEENQKDIVEANLTVLRARMEDLRKKERRIPVPARREGLEFDNGCKYLSMSDGTKFDRDFDCKILKNFALISECLEVVTTVGGAVGLVFVGGSLGICLVSLLLNDLPTQYLPASRLVVFAPRIVAVGRLTEQMCSEAMEDIFGKATAAVEELYHIRDTFFSVNPDDKTSKLRELSDLALKILDSIPPGTENEAKLVEESIQHAKEAVTLDVKDGNSWYNLGNACLTSFFVTGAWDHSKLLQSLKAYQNAVNKYLENYDRALSGFEAAALKDPSLGATREVHKMVNLLDKLDNMLKAHAKTRRGASLPSSVDAVNSNFSYKRATVDQLSEGLNKTVAVTGKVLSFIKHDSLAPLYYLVCDSNQTCFVLSLYGMRNDTEKKMSSQVKEGDQITLPEPYYRNLDFSWKGKHYQFKSIRVDFLEQVIVNGKAPSAHQAVQASIYAQHKP 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2140776 2152360 + Lsi04G002020.1 Lsi04g00202 660251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00202 480 Pfam Tetratricopeptide repeat protein 5 OB fold domain 354 472 IPR032076 -
Lsi04g00202 480 Coils Coil 34 61 - -
Lsi04g00202 480 MobiDBLite consensus disorder prediction 1 37 - -
Lsi04g00202 480 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 177 397 - -
Lsi04g00202 480 MobiDBLite consensus disorder prediction 12 26 - -
Lsi04g00202 480 Gene3D - 322 479 IPR038645 -
Lsi04g00202 480 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 177 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00202 K24928 TTC5; tetratricopeptide repeat protein 5 - csv:101212286 456.832
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g394 . . . . . . . . Cmo04g01542 . . . Car04g01530 . Sed06g1921 . Cpe01g01313 Bhi07g01245 Tan04g0785 Cmetu10g0428 . Hepe01g1144 . . Cla05g02259 Cam05g2428 Cec05g2445 Cco05g2489 Clacu05g2417 Cmu05g2284 Cre05g2402 . . . . Lsi04g00202 Csa05g02665 Chy10g01196 Cme10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003498 1 3 0 1 1 1 2 2 1 1 1 1 2 2 2 2 1 2 2 1 2 0 2 1 3 1 2 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00202 Lsi_Chr04 FPKM 1.427056 1.381665 7.257029 7.291995 0.0 0.0 0.0 0.0 0.0 0.0