Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00204 ATGTCTGTCTCCATTTCCTTCCTTAATTCTTCTCTCTCCCTCTCCCTTCCCCCTCCCCATGCTCTCTTTCCCCCTCCTCCCTCTTCCATGTCTCTCCTCCGCCGCCTGAGGCCCGGCCATCTTAGATTCAACCTCCGACACCACGCCGACCGATTCGCTACCGCTGCTGCTGCCGCCGTACGGCAGGACACCGCTGCTTGGACTCAAGCTCCTCTCGCCGAAGTCGAGCCTGCCGCTGAGTCTCTCTTCCACGTTTCCATAGACGTGTCCGACGCTCCGGACCTCGCTGCTTCTCACACGCGTGCTGGTCAGTACCTGCAGCTTCGTGTCCCCGACGTGGAGAAACCGACGTTCCTTGCCATTGCATCTCCTCCGTTACTTGCGTCTGCGGAAGGCGTGTTCCAGTTCTTGGTGAAGAGCGTGGAGGGCTCAATAGCTGAGCTTCTCTGTGGATTGAAGAAAGGAGATGTCGTGCAACTCAGTCAGGTCATGGGGAGGGGATTCGATGTCGATCAAATCGCGCCGCCTCAAGATTACCCTACCGTTTTGATTTTTGCAACTGGATCTGGAATCAGACTTATGGATATGTTATCTCGAACAAATAAGAACGAATTAGAATCAGAAGTTTTTGAACCTCGATTTGTGGTTAATATTTATAAGCGCAGCAAGGAGAGCATTATGTTGGACACCATAAAGACGGTTAGTAATTGGATTTTCTTTGCATGGAATTCAGATGTTGATCAGGTCCCTAGACAAAGCTATCACAAAAGTGGGAGTGGTTCACATTTTGCATCTTCTGTATGGCCAGGGTACCCTTGTGGTGTCTTCCTTAGTCCAATACGATCTCTGATTGAGTCAGGCTTTGGTGCCAGTAAGAGGTCCGATGTCAGGCTATATTATGGGGCAAGAAACCTCAAAAGAATGGCTTATCAGGATAGATTTGATGAGTGGGAATCTTCTGGTGTTAAGGTTGTGCCAGTATTGTCACAACCCGAGAGTGATTGGACTGGTGAAAGTGGCTATGTCCAGGCTGCCTTCAGTAAAGCAAAGAAAGCTTTTGACCCTCTTTCGGCTGGTGCTGTACTCTGTGGAAGTTACATCGATTCTTGTAGCAGATGGAGTTTCTAG 1128 49.82 MSVSISFLNSSLSLSLPPPHALFPPPPSSMSLLRRLRPGHLRFNLRHHADRFATAAAAAVRQDTAAWTQAPLAEVEPAAESLFHVSIDVSDAPDLAASHTRAGQYLQLRVPDVEKPTFLAIASPPLLASAEGVFQFLVKSVEGSIAELLCGLKKGDVVQLSQVMGRGFDVDQIAPPQDYPTVLIFATGSGIRLMDMLSRTNKNELESEVFEPRFVVNIYKRSKESIMLDTIKTVSNWIFFAWNSDVDQVPRQSYHKSGSGSHFASSVWPGYPCGVFLSPIRSLIESGFGASKRSDVRLYYGARNLKRMAYQDRFDEWESSGVKVVPVLSQPESDWTGESGYVQAAFSKAKKAFDPLSAGAVLCGSYIDSCSRWSF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2156719 2161158 - Lsi04G002040.1 Lsi04g00204 660253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00204 375 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 277 365 IPR039261 -
Lsi04g00204 375 PANTHER - 4 191 - -
Lsi04g00204 375 PANTHER - 277 365 - -
Lsi04g00204 375 SUPERFAMILY Riboflavin synthase domain-like 67 167 IPR017938 -
Lsi04g00204 375 PANTHER F9L1.8 PROTEIN 4 191 - -
Lsi04g00204 375 PANTHER F9L1.8 PROTEIN 277 365 - -
Lsi04g00204 375 Gene3D - 273 367 IPR039261 -
Lsi04g00204 375 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 65 170 IPR017927 GO:0016491
Lsi04g00204 375 Pfam Oxidoreductase NAD-binding domain 277 364 IPR001433 GO:0016491
Lsi04g00204 375 Gene3D Translation factors 59 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00204 - - - csv:101212924 291.967
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g391 . . . . . . Bma14g01960 . Cmo04g01545 Cmo18g00991 . Cma18g00983 Car04g01532 Car18g00905 Sed06g1922 Cpe09g00333 Cpe01g01315 Bhi07g01248 Tan04g0787 Cmetu10g0609 Lac13g0553 Hepe01g1146 . . Cla05g02260 Cam05g2429 Cec05g2446 Cco05g2492 Clacu05g2418 Cmu05g2285 Cre05g2403 Cone13ag0788 . . . Lsi04g00204 Csa05g02663 Chy10g01194 Cme10g00208 . . Bda07g01760 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006437 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00204 Lsi_Chr04 FPKM 9.166359 10.529918 16.681528 17.573317 8.490652 10.607701 8.895162 22.194695 20.817553 21.183565