Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00207 ATGGAGAACGGGAAGGATTGCGCCATGGAAGAGATTTTACTAGCGAAGCAGAAGGAAAACAATCTCTCTTCAACATCCAGGGGTGCTTTTTTGGAAGAGATGAAGATAGTAGGATTCTTGGCAGCGCCGTTGGTCGCCGTCACTTTCTCGCAGTTTATGTTGCAGATTATCACCATGATGATGGTCGGACATCTCGGTGCTCTTGCACTCTCCAGCACCGCCATAGCAATTTCCATTTCTGCAGTTACAGGCTTCAGCGTTCTCTTAGGCTTGTCCAGTGCCCTCGAAACTCTATGTGGACAAGCTTATGGAGCTCAGCAATATCAAAAAGTTGGAGTTCAAACTTACACTGGTATGTTTTGCATCTTCTTAATTTGCATTCCTCTGTCCCTATCTTGGCTCTTTTTGGAAAAGCTACTTCTATTCGTTGGTCAAGATCCTCTGATTTCACACGAAGCTGGGAAATTCATTGTTTGGCTGATTCCTGGGCTCTTTGCTTGCGCATTTCTTCAACCACTTGTGAGATATTTCCAGGCACAAAGCTTAGTAATTCCCATGGTCATTTTCTCTTGCATCACTCTCTGTTTCCACATACCAGTTTGTTGGTTCATGGTGTACAAGGCTGGACTCAGAAATCTGGGAGGAGCATTATCAATGAGTCTGTCATATTGGCTGAATGTGATTTTGCTAGCATTATACATGAAATTCTCGCCTAAGTGTGAGAAAACTCGTGGAGTCATTTCTATGGAGCTGTTTCGAGGAATTCGAGAGTTCTTTAGTTTGGCAATTCCTTCTGCGGTGATGTTCAATATTTATCTTTGCAGCCTTGAATGGTGGTCATTTGAGCTGATTGTCTTACTATCAGGGCTGTTGCCGAATCCGGAGCTTGAAACTTCAGTTTTATCTGTTTGGTATATGTCTCTTCTTAACAGTCTCAATACAATTGCTACCCTTTATTCAATAGCATATGGACTTGGTGCTGCAGGAAGCACAAGAGTGTCCAATGAACTAGGTGCTGGGAATCCGCAGGCGGCTCGTCGAGCAACAAGCGTTGTTGTATTCCTCACCATCTTGGAAACCTCAATATTGAGCATAATCCTTTTTGCACTTCGTCGCGTCTTTGGTTATACTTTCAGCGATGAGAAGGATGTTGTGGCTTATGTGGCCTCTATGGCACCTCTGATTTGCATATCCGTGATATTGGACGGCATACAGGGAGTCCTTTCAGATTTAGATTTAGGACATCACATTGGTGCTTATGTAAACTTGGGGGCCTTCTATCTTTGTGGGATTCCAGTTGCTGCCCTTCTTGGTTTCTTGGTGCATCTGAGAGGAAGAGGGCTTTGGATTGGCATACAAATTGGGGCTTTGGTGCAAGCCATGTTGCTCTCCTTCATTACAAGTCGAATAAATTGGGAAGAACAGAACGGTAAGTACATCAGAAGATCGGAATTTGAAACTTTGAGAACATGCTTCAATGCCCTAAACCATATGCAACTATCAATTAAT 1509 43.47 MENGKDCAMEEILLAKQKENNLSSTSRGAFLEEMKIVGFLAAPLVAVTFSQFMLQIITMMMVGHLGALALSSTAIAISISAVTGFSVLLGLSSALETLCGQAYGAQQYQKVGVQTYTGMFCIFLICIPLSLSWLFLEKLLLFVGQDPLISHEAGKFIVWLIPGLFACAFLQPLVRYFQAQSLVIPMVIFSCITLCFHIPVCWFMVYKAGLRNLGGALSMSLSYWLNVILLALYMKFSPKCEKTRGVISMELFRGIREFFSLAIPSAVMFNIYLCSLEWWSFELIVLLSGLLPNPELETSVLSVWYMSLLNSLNTIATLYSIAYGLGAAGSTRVSNELGAGNPQAARRATSVVVFLTILETSILSIILFALRRVFGYTFSDEKDVVAYVASMAPLICISVILDGIQGVLSDLDLGHHIGAYVNLGAFYLCGIPVAALLGFLVHLRGRGLWIGIQIGALVQAMLLSFITSRINWEEQNGKYIRRSEFETLRTCFNALNHMQLSIN 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2174910 2184909 + Lsi04G002070.1 Lsi04g00207 660256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00207 503 CDD MATE_eukaryotic 33 475 IPR045069 GO:0042910|GO:1990961
Lsi04g00207 503 Pfam MatE 277 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi04g00207 503 Pfam MatE 43 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi04g00207 503 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 479 - -
Lsi04g00207 503 PANTHER PROTEIN DETOXIFICATION 14 32 479 - -
Lsi04g00207 503 TIGRFAM matE: MATE efflux family protein 43 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00207 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101213643 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00207 Lsi-Chr4:2174910 Lsi04g00209 Lsi-Chr4:2206277 0 dispersed
Lsi08g00072 Lsi-Chr8:1565582 Lsi04g00207 Lsi-Chr4:2174910 7.16E-11 dispersed
Lsi04g00207 Lsi-Chr4:2174910 Lsi04g00208 Lsi-Chr4:2193506 0 tandem
Lsi02g00941 Lsi-Chr2:9283880 Lsi04g00207 Lsi-Chr4:2174910 2.24E-22 transposed
Lsi04g00207 Lsi-Chr4:2174910 Lsi06g01304 Lsi-Chr6:23575309 5.10E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g387 . . . . . . . . . Cmo18g00994 . Cma18g00986 . . . Cpe09g00331 Cpe01g01317 Bhi07g01253 . . Lac13g0548 Hepe01g1149 . . Cla05g02262 Cam05g2432 Cec05g2449 Cco05g2495 Clacu05g2421 Cmu05g2288 Cre05g2406 . . . . Lsi04g00207 Csa05g02660 Chy10g01191 Cme10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00207 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.448139