Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00208 ATGGCCGATTCTCCATTGCTGGAATGGGTGGAGAACCGCAGAGATACAACATGGTCTGCTTTCTTTGGGGAGGTCAAGACTGTTGGGTTCTTAGCGGCTCCATTGGCTGCTATTAATCTCTCTCAGTTCTTGATTCAGACTGGTTCTTTGATGATTGTGGGTCATCTTAATGAACTCTCTCTTTCCAGTACCGCCATTGCCATCTCTTTAGCTGCTGTTACTGGATTCAGTGTGATTTCATCGCTAGGTCGAATCTTCACCGGAGCAAGCCTAGCGAATCTTCACCGGAGCAAGCCGATAGGTATGGCTAGTGCCCTTGAAACTCTATGTGGGCAAGCTTATGGGGCTGGACAATATCAAAAATTTGGGAATCATATTTACACTGCTATGGTGTGTCTCCTAGTAGTTTGCCTCCCTATAACTCTGTTATGGATCAACATGGGGAAGCTACTTGTTTTGATTGGCCAAGATCCTTTGATATCACGTGAAGCTGGGAAGTTTATGATTTGGCTTATCCCTGGGCTCATTGCTTATGCATTTCTGCAGCCACTTATGAGATATTTTCAGATGCAAGTCTTAGTGATTCCCATGCTTGTAATTAGTTGGATCACTTTTTGTATGCACATACCTCTCTGTTGGGTTTTGGTGTTTAAAACCGGACTCAATAACGTTGGTGGAGCTTTAGCCATGAGTATTTCATATTGGTTGAATGTGATTTTTCTTGCATTATATATGAAATTTTCTCCCAAGTGTGAAAAAACTCGCGGTGCAATATCTATGGAGTTGTTCAAAGGAATTGGAGTCTTCCTTCACTTCGCCATCCCTTCTGCAGTAATGACTTGCCTTAGTTGGTGGTCATTTGAGCTGATTATCTTATTGTCTGGGCTTCTTCCAAATCCAGAGCTTGAATCTTCAGTTCTATCTGTTTGCTTCAATACCTTGACAACAGTATTTACATTAGCATATGGAATCGGCAGTTCAGGCAGTACCAGAGTTTCAAATGAACTAGGAGCTGGGAAGCCACAAGCTGCTCGTGTAGCTGCTGGGGCAGCAATATTTCTTGCAGTTGTGGAAATCATCATAGTGAGCATGGCCCTCTTTGCTCTTCGTCATGTTTTCGGTTATGCTTTCAGCAGCGAAAAGGAAGTTGTGGATTATGTTGCTGTCATGGCTCCCCTAGTTTGTATATCAATCATATTAGATGCCATTCAAGGGGTCATTTCAGGTATTATAAGAGGATGTGGGTGGCAGCGTGTAGGGGCTTATATAAACTTAGGGGCTTTCTATCTTTGTGGAAATCCAGCTGCTGTAGCTCTTGGTTTCTGGGCAAATCTGGGAGGGAGGGGCATGTGGATTGGCATCCAAACTGGGGCTTTCATACAGATGTTTCTACTTGCGATTGTCATGAGCCGTATTAACTGGAACAAACAGGCAGATGCAGCAAGGGAGAGGATCTTTGATGCAAAAGACTTGGAAAATAAATATGAGGAACAAAGTGTTTGA 1503 43.31 MADSPLLEWVENRRDTTWSAFFGEVKTVGFLAAPLAAINLSQFLIQTGSLMIVGHLNELSLSSTAIAISLAAVTGFSVISSLGRIFTGASLANLHRSKPIGMASALETLCGQAYGAGQYQKFGNHIYTAMVCLLVVCLPITLLWINMGKLLVLIGQDPLISREAGKFMIWLIPGLIAYAFLQPLMRYFQMQVLVIPMLVISWITFCMHIPLCWVLVFKTGLNNVGGALAMSISYWLNVIFLALYMKFSPKCEKTRGAISMELFKGIGVFLHFAIPSAVMTCLSWWSFELIILLSGLLPNPELESSVLSVCFNTLTTVFTLAYGIGSSGSTRVSNELGAGKPQAARVAAGAAIFLAVVEIIIVSMALFALRHVFGYAFSSEKEVVDYVAVMAPLVCISIILDAIQGVISGIIRGCGWQRVGAYINLGAFYLCGNPAAVALGFWANLGGRGMWIGIQTGAFIQMFLLAIVMSRINWNKQADAARERIFDAKDLENKYEEQSV 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2193506 2199115 + Lsi04G002080.1 Lsi04g00208 660257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00208 500 TIGRFAM matE: MATE efflux family protein 96 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi04g00208 500 PANTHER PROTEIN DETOXIFICATION 14 24 481 - -
Lsi04g00208 500 CDD MATE_eukaryotic 24 478 IPR045069 GO:0042910|GO:1990961
Lsi04g00208 500 PANTHER MULTIDRUG RESISTANCE PROTEIN 24 481 - -
Lsi04g00208 500 Coils Coil 478 498 - -
Lsi04g00208 500 Pfam MatE 275 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi04g00208 500 Pfam MatE 94 214 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00208 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101207807 825.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00208 Lsi-Chr4:2193506 Lsi06g01304 Lsi-Chr6:23575309 4.13E-96 dispersed
Lsi04g00207 Lsi-Chr4:2174910 Lsi04g00208 Lsi-Chr4:2193506 0 tandem
Lsi04g00208 Lsi-Chr4:2193506 Lsi04g00209 Lsi-Chr4:2206277 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g385 . . . . . . . . . . . . . . . . . Bhi07g01255 . . . Hepe01g1150 . . . . . . . . . . Cone19ag0795 . . Lsi04g00208 Csa05g02659 . Cme10g00212 . . . . . . . . . . . . . . . . Cpe04g01386 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00208 Lsi_Chr04 FPKM 5.393898 5.352483 6.21735 5.20139 7.908188 9.715842 8.476369 12.371299 11.14572 11.133308