Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00209 ATGGCCGACTCCCCATTGCTGGAATGGGTCGGGGACCGCAGGGAAACAACATGGGTTGCTTTCTTTGGGGAGGCGAAGATTGTTGGGTTCTTAGCGGCTCCATTGGCTGCTATTAATCTGTCTCAGTTCTTGATACAGACTGTTTCTTTGATGATCGTGGGTCATCTCGATGAACTCTCTCTCTCCAGTACCGCCATAGCCGTCTCTTTAGCTGCTGTTACAGGATTCAGTGTGATTATAGGTATGGGTACTGCCCTTGAAACTTTATGTGGGCAAGCTTATGGGGCTGGACAATATCGAAAATTTGGAAATCATATTTACACTGCTATATTGTGTCTCCTAGTAGTTTGCCTCGCTATAACTCTGTTATGGATCAACATGGGGAAGCTACTTGTTTTGATTGGCCAAGATCCTTTGATATCATGTGAAGCTGGGAAGTTCATGATTTGGCTTATTCCTGGGCTCATTGCTTATGCATTTCTGCAACCACTTATGAGATATTTTCAGATGCAAGTTTTTGTAATTCCCATGCTCATATTTAGTTGGGTCACCTTTTGTCTCCACATACCTCTCTGTTGGGTTTTGGTGTTTAAAACAGGACTCAAAAACCTCGGTGGAGCTTTAGCCATGAGTATTTCATATTGGTTGAATGTGATTTTTCTTGCGTTATATATGAAATTTTCTCCCAAGTGTGCAAAAACTCGTGGTGTAATTTCTATGGAGCTGTTCAAAGGAACTAGAGTCTTCCTTCACTTCGCCATCCCTTCTGCAATAATGACTTGCCTTAGTTGGTGGTCGTTTGAGCTGATTATCTTACTGTCTGGACTTCTGCCACATCCAGAGCTTGAATCTTCAGTTCTATCTGTTTGCTTCAATACCATGACAACAGTATTTACATTAGCATGTGGGATCGGTAGTGCAGGCAGTACTAGAGTTTCAAATGAACTTGGAGCTGGGAATCCACAAGCTGCTAGTTTAGCTGCTGGGGCAGCAATATTTCTTGCAGTTGTGGGGATCATGATAGTGAGCATTGTCCTCTTCGCTCTTCGTGATGTTTTCGGTTATGCTTTCAGCAGCGAAAAGGAAGTTGTGGATTATGTTGCTGTCATGGCTCCCCTAGTTTGTATATCAATCATATTAGATGCCATTCAAGGGGTCCTTTCAGGTATTGCAAGAGGATGTGGTTGGCAGCGTATAGGGGCCTATATAAACTTAGGGGCTTTCTATCTCTGCGGAAATCCAGCTGCTGTAGCACTCGGTTTCTGGGCAAATCTGAGAGGCAGGGGCCTGTGGATTGGCATCCAAATGGGGGCTTTCGTGCAGATGCTTTTACTCGCGATTGTCATGAGCCATGTTAACTGGAAAAACCAGATGTTGGATCAAAACCCATCGTCTTCCCTTGAAAAGGTGAGCTGGGAGGATGTTCTAAAAATGGGCGACCAAGTCTACAAGCAGGCGACTGTGGCTGGAATGGTGTGGACTGGAGAAAGACTAGAAGTTAAAGCAATTGAGGAAAATATGGCATCTTATTTCAATATGCTGCAGGGTTTCCTCTTGGTTTCCCATGGGAGTAAAGTGGGTGCTGGCCCTACTTTGTCTTCTGTTATACATGCATCTGTGAAGCAATTATGCTCTACGGTCATAAACCTTAGTAGTAGTAGCTCTGGACCATCATTAGGACCACGGAATAATGAGGATCAAAACCACGTAGTTCCACAGTTGGTCGGTGCGGTTTGGGAAGCTTGCTCTGCTCTTAAGAAAGCTCCTTCGACAAATATAACTGCAATTGGCAGAGCAATAACCCAGGTAGCTGTATCAGTGAAGGATGTCCTTCGAGAAATGAAGGAGCTTAAACAAGGTTCCTCCGACTTGGAAGAAGCTCCTGAAGAACCTTCTAACGAAGTCGAAGGCAATTCACAAGATGAGGGTAATACAAGTGATGATGCTGATATAGGTAACGACTTGTCAGCCGAAGAGATGAGAGTTGCTCAATCTGCTATTAGTGTTGTATCTTCAATTCTTCTAGTTATAAAGGAACTTACTCGCTCTATCACAAGTTTGCTTAAGCTGGAAAATGTAAACAAGGAAAGTAACTTTGCGTCCTTGGAGAATCTATTGAAGCTATGCCAAGGAATTGGAGTGCAGGTTGACGAGCTTGGAGCTTGTCTTTACCCCCCACAAGAGGCCCCTGCCATTAAAGTAGCTTCGGAGAAAATCTCTAGCTTTCTTGACAATATGCAGGCAGAGTTGGGATATCTTAATGGTAATTCGGAAGCCTTTCTTCAGGCGTGCAACAATCTCCAAAATTCGTTGAAGCTTCTCGAGATTGAAATAGGTAGCTTCACATCTACCGATATAGAAAGTAGAATGCAGAATGTAACTTTAAGCGATTAA 2394 43.61 MADSPLLEWVGDRRETTWVAFFGEAKIVGFLAAPLAAINLSQFLIQTVSLMIVGHLDELSLSSTAIAVSLAAVTGFSVIIGMGTALETLCGQAYGAGQYRKFGNHIYTAILCLLVVCLAITLLWINMGKLLVLIGQDPLISCEAGKFMIWLIPGLIAYAFLQPLMRYFQMQVFVIPMLIFSWVTFCLHIPLCWVLVFKTGLKNLGGALAMSISYWLNVIFLALYMKFSPKCAKTRGVISMELFKGTRVFLHFAIPSAIMTCLSWWSFELIILLSGLLPHPELESSVLSVCFNTMTTVFTLACGIGSAGSTRVSNELGAGNPQAASLAAGAAIFLAVVGIMIVSIVLFALRDVFGYAFSSEKEVVDYVAVMAPLVCISIILDAIQGVLSGIARGCGWQRIGAYINLGAFYLCGNPAAVALGFWANLRGRGLWIGIQMGAFVQMLLLAIVMSHVNWKNQMLDQNPSSSLEKVSWEDVLKMGDQVYKQATVAGMVWTGERLEVKAIEENMASYFNMLQGFLLVSHGSKVGAGPTLSSVIHASVKQLCSTVINLSSSSSGPSLGPRNNEDQNHVVPQLVGAVWEACSALKKAPSTNITAIGRAITQVAVSVKDVLREMKELKQGSSDLEEAPEEPSNEVEGNSQDEGNTSDDADIGNDLSAEEMRVAQSAISVVSSILLVIKELTRSITSLLKLENVNKESNFASLENLLKLCQGIGVQVDELGACLYPPQEAPAIKVASEKISSFLDNMQAELGYLNGNSEAFLQACNNLQNSLKLLEIEIGSFTSTDIESRMQNVTLSD 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2206277 2215222 + Lsi04G002090.1 Lsi04g00209 660258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00209 797 TIGRFAM matE: MATE efflux family protein 34 431 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi04g00209 797 MobiDBLite consensus disorder prediction 618 652 - -
Lsi04g00209 797 PANTHER PROTEIN DETOXIFICATION 14 522 - -
Lsi04g00209 797 Coils Coil 607 627 - -
Lsi04g00209 797 Gene3D I/LWEQ domain 588 778 - -
Lsi04g00209 797 Pfam MatE 255 414 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi04g00209 797 Pfam MatE 34 194 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi04g00209 797 CDD MATE_eukaryotic 24 457 IPR045069 GO:0042910|GO:1990961
Lsi04g00209 797 Pfam Grap2 and cyclin-D-interacting 474 747 - -
Lsi04g00209 797 PANTHER MULTIDRUG RESISTANCE PROTEIN 14 522 - -
Lsi04g00209 797 MobiDBLite consensus disorder prediction 637 651 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00209 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101208050 767.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00941 Lsi-Chr2:9283880 Lsi04g00209 Lsi-Chr4:2206277 1.58E-46 dispersed
Lsi04g00207 Lsi-Chr4:2174910 Lsi04g00209 Lsi-Chr4:2206277 0 dispersed
Lsi04g00209 Lsi-Chr4:2206277 Lsi06g01304 Lsi-Chr6:23575309 4.63E-97 dispersed
Lsi04g00208 Lsi-Chr4:2193506 Lsi04g00209 Lsi-Chr4:2206277 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g384 . . . . . . . . Cmo04g01548 . . Cma18g00987 Car04g01534 Car18g00908 Sed07g2128 Cpe09g00330 Cpe01g01318 Bhi07g01256 Tan04g0793 Cmetu10g0036 Lac13g0546 Hepe01g1151 . . . . . . . . . Cone13ag0790 . . . Lsi04g00209 Csa05g02658 Chy10g01190 Cme10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00209 Lsi_Chr04 FPKM 25.704344 28.262835 12.046056 11.408896 19.30073 16.915829 18.443659 12.467851 11.895514 12.648074