Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00210 ATGGGAAGCATCAGCGGTGCTCTAACATCGCATTTGCAGCTCAGTCATTGCCGTTTCTCTGCTAGAACCTCTCAGTCTCAGCTTGCTTCAGCTCGAAATAGCCCAACGTCGAGAAGAACGAAGTTGCGATTCACCGGTTTGCTCAGCCGTAGGAATTTCAACAGATTTGTGTGTTCTGCTGTTGATGACGATGTAAGAGAGAAGCAGACGGAGTTGGGTGGTGGAAATGGCTCCACCATCGTTGAAGATGTGCCAGGTATTAGTATTGCCAAAACCTACGTTTCGTCTGAAAATCGGGCCCGAATTTGCACTAGAAATTACTCGTGTTTAATAGAGATGTATGTTTTGGAGAGGAATGTCTTGCTCAACGTTGTTACTTCTGAAGTTGTGGATAAAACTTATTGGGACTCGACATGCTTTCAGATACTTCCCTTGTATTTAAATGTTCATTGCATATCTTATGTGGCTGCAGAAAGTTTATGCTATAATTGTAAAGATCTACTTCCAGATGATAAAGAAATGAGCGTGTTTGATCATCTTGAAGAACTACGTCAGAGGATATTTGTGTCAGTTTTGGCGGTGGGAGCTGCAATTGCTGGATGCTTTGCATTTTCGAAAGAACTCATCTTAATTCTTGAAGCTCCAGTTAAGGAACAAGGTGTAAGGTTCCTGCAGCTTGGTCCTGGGGAGTTTTTCTTTACAACATTGAAGGTATCAGGATACTGTGGCCTTCTTCTTGGAAGTCCTGTCATCCTCTATGAGATTATTGCGTTTGTTCTTCCAGGACTGACAAGGACAGAAAGACAGTTTCTGGCACCAATCGTTCTAGGCTCCTCTATACTTTTCTATGCAGGAATTGCCTTCTCGTACATAGTTTTGACACCAGCAGCCCTAAATTTCTTTGTTAGTTATGCTGAAGGAGCTGTTGAATCCTTGTGGTCCATAGATCAATACTTCGAATTTGTACTTGTTCTTATGTTCAGTACAGGCTTGTCTTTCCAGGTTCCAGTAATACAGATTCTACTTGGACAACTTGGGCTTGTCTCAGGAGACCAAATGCTTTCTATTTGGAGATACGTTGTTGTAGGTGCAGTGGTGGCAGCTGCTGTACTCACACCATCAACAGATCCCCTAACTCAGGTACTTCTGGCAGCTCCCCTGCTGGGCCTTTACTTGGGGGGTGCTTGGGTGGTCAAGCTCTCAGGGCGATAG 1212 43.98 MGSISGALTSHLQLSHCRFSARTSQSQLASARNSPTSRRTKLRFTGLLSRRNFNRFVCSAVDDDVREKQTELGGGNGSTIVEDVPGISIAKTYVSSENRARICTRNYSCLIEMYVLERNVLLNVVTSEVVDKTYWDSTCFQILPLYLNVHCISYVAAESLCYNCKDLLPDDKEMSVFDHLEELRQRIFVSVLAVGAAIAGCFAFSKELILILEAPVKEQGVRFLQLGPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRTERQFLAPIVLGSSILFYAGIAFSYIVLTPAALNFFVSYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQILLGQLGLVSGDQMLSIWRYVVVGAVVAAAVLTPSTDPLTQVLLAAPLLGLYLGGAWVVKLSGR 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2215027 2217605 - Lsi04G002100.1 Lsi04g00210 660259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00210 403 Hamap Sec-independent protein translocase protein TatC [tatC]. 171 403 IPR002033 GO:0016021
Lsi04g00210 403 ProSitePatterns TatC family signature. 318 337 IPR019820 -
Lsi04g00210 403 TIGRFAM tatC: twin arginine-targeting protein translocase TatC 177 391 IPR002033 GO:0016021
Lsi04g00210 403 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC 158 403 IPR002033 GO:0016021
Lsi04g00210 403 Pfam Sec-independent protein translocase protein (TatC) 178 386 IPR002033 GO:0016021
Lsi04g00210 403 PRINTS Bacterial Sec-independent translocation TatC protein family signature 318 346 IPR002033 GO:0016021
Lsi04g00210 403 PRINTS Bacterial Sec-independent translocation TatC protein family signature 175 202 IPR002033 GO:0016021
Lsi04g00210 403 PRINTS Bacterial Sec-independent translocation TatC protein family signature 267 293 IPR002033 GO:0016021
Lsi04g00210 403 PRINTS Bacterial Sec-independent translocation TatC protein family signature 249 267 IPR002033 GO:0016021
Lsi04g00210 403 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC, CHLOROPLASTIC-LIKE 158 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00210 K03118 tatC; sec-independent protein translocase protein TatC - twl:120002316 447.973
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g383 . . . . . . . . Cmo04g01549 . . . Car04g01535 . Sed07g2127 . Cpe01g01319 Bhi07g01257 Tan04g0794 Cmetu10g0304 Lac13g0545 Hepe01g1152 . . Cla05g02263 Cam05g2433 Cec05g2451 Cco05g2497 Clacu05g2423 Cmu05g2290 Cre05g2408 Cone13ag0791 . . . Lsi04g00210 Csa05g02657 Chy10g01189 Cme10g00215 . . Bda07g01453 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008998 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00210 Lsi_Chr04 FPKM 5.729864 5.453452 0.795743 0.754216 0.0 0.0 0.0 0.0 0.0 0.0