Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00213 ATGCCATTTCCTCTTCTTCTTCCTCATCCTCTTCCCTCTCTGCAATTTCATCGCCCTTCTCCACTTCCCAAAACCCTAAAACCCCCTCCTCCCACATTCCCAATGAAGGACCGCACTCCTTCCTCCAATGGCGCTGTTTACGTCCCTCCTCACATCCGTCTCCGTTCCGTCGTTACTCCTTCTAATAATTCCTCTGCTGTTTCCGCTGTTGACTGCAAGCTTAAGGCGGCTCCGGCTTCGATGCTCGATTCAGGAACCACTGCTTCACCTTGCCTGCATGCTCGATCTCAAGAACTGCTTCCGACGGGGAACTCGCGTTTTAATTCCGTGCAGTATGATTCGGCTTGCGACGATGGGGCTCCTGTGGAGAGTTGGGCTTGTAATTTCGAGTGTTCGCATCAATCGGGTTTTCCACCTTCTGTCAACATTGATTTGTGGAAAAGGAAGTTAGCATTACTTTTACGTGACAAGGAGAAGCAAGAGTTAATTTCAAGGGACAAAAAAGATAGACAAGACTTTGAGGAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCTGTTTTTAGTAAGGTCCCGTTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGAGAGGTCTCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTGGGAGAATTTCTCTCTCAAAAGTCTAGGTGTAAAGGTTTTCAAGATATTTCCGTCTCTAGATCAAGCAGCAGTGGTAGCATTGCTACAGATGAAGGGCTCTTTGAGCAACCTGAGCCACAAGCATCTAGTAAGGCTGTAATGGAAAAAATTCTTTGGAGGAGAAGTTCACATCTGCGTGATCAACAGCAGGCTTGGCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAGTTCATTTTGGAATCAGAAATAGAATCACTCCGTGGGGCTGTTTGCAGCATCATATGTACACAGCCAAGACGAATATCTGCTATGTCTGTCTCTGAGAGAGTTGCTTCTGAAAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACCACGGGTATCTTGTTAAGAAGATTGCTCGTTGATAGAAATTTGAAAGGCATAACTCATGTCATTGTTGACGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTAATTCTAATGAGTGCAACTTTAGACGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCACATTCCGTTTCATTCCTCTATGATGACTGATTTGAATGTTGAATGTTCAGTCTTGGCACCGGGATTCACACACCCTGTCCGAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTGACTCCATACAATCAAATAGATGATTATGGTCAAGAGAAGATGTGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCCACTGTTCAGGATGCACTTATGGCAGCTGATTTTAAGGAGTACAGTCTTCAAACTCAGGAGTCTTTATCGTGTTGGAATCCAGACTGTCTTGGTTTTAATCTCATAGAATATCTTCTAGTCAGGATATGTGAGAGTGAAACACCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAGGAGAAACTTCAGTTTCATCCTTTATTAGGAGATCCATGTCGTGTCATGTTGTTGGCGTGCCATGGCTCAATGGCCAGCTCAGAGCAGAGGTTAATATTTACTGAACCTGACAAAGGGGTGAGGAAGGTAGTGCTTGCAACAAATATTGCCGAGACAAGTATCACGATAAATGATGTTGTGTATGTTCTGGACTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCCTCTTGGATATCCAAGGTTTCTGCTCAACAATCCAAGAGCTTCATGTTTCCCCAATACTTCATTTGTGATATATACGTGCAATCTGCAATCAAATATGTGACAGTTTTGGGAGTGAGAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGTTACCATCTATACCCTAGTCAACCATTGGTTGCAGGTTCAGAATGCTATTGAATATTTGAAGATCATTGGAGCGTTTGATGAGAGTGAAAATCTTACTGTTTTAGGTCGTTATTTGACTATGCTCCCAATGGAACCAAAACTGGGAAAGATGTTGATAGTAGGTGCTATCTTCAATTGTTTGGATCCAATTTTGACCATTGTTGCTGGCCTCAGTGTAAGAGACCCTTTTCTAACGCCACTTGAGAAGAAGGATAAATGTCTTTCGAAGTTCCCAGTGTCATTGGAAGTGAAGGAATTGTGCTTGTGCTCAGCTGCTGTAATAGCAATGAAAGTTGTCAACCCTTTTTTGCTTTATCCTGCAAGGATTGAAATGCGACCTTTGCTTCCCATTGAGTCAAACTTAACGATTTCAGGCAACCTTTTTGATGGAGGTTCTTTTGAAGCTAACGTTAACTGCAACCCTATTTTCAAAGAAAGAGAAAAGGCTGCAGAGGCTGCAAAATCCCAATTTTCACAAGATCATAGTGATCACCTTGCTATTATCCGGGCTTATGGGGGATGGAAAGAAGCTGAGAGGAACTTTGGTGCATATGACTTCTGTTGGAAGAACTTCCTTTCTATACAGTCGATGAAGGCTATTGATTCACTAAGAAAGGAGTTTTTTTCTTTGCTTAGAGATACTGGCTTGGTCGATGGGTACTCAGACACCTACAATGTTTGGAGTCTTGATGAACAACTCATACGTGCAGTTATTTGCTATGGCCTCTATCCTGGAGTTTGCTCCGTTGTGCATAATGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTGCTTCTCTATTCGGTAGGCATGTTCTTCAACCGCTTGTATAACTCAGTCAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTCAATGAGAAGATTAAAGTGAACTCCATTTTCCTTCGAGATTCAACAGCCATCTCTGACTCGATGTTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATCGTGAGGGACACTTGAAAATGTTGGGCGGTTTTTTGGAGTTTTTTATGAAACCTGATTTAGCAGAGACATATCAGAAATTGAGAATGGAACTTGAAGAGCTTATACAGGTGAAGCTACTAAATCCAAAGATGGACTTTCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTCGTTTTTGGCTGCCAGATTCTTCAGCAACCCTCCAAGACATCAGCTCCTGCAGCAGCACCAACTGCTGTTTCGAGAATTGAAAGTGGACCTGGTGGTGACAATTCTAAGAGTCAGCTCCAGACTTTACTCACGAGGGCTGGATATGCTGCACCCATCTATAAGACTAAGCAATTAAAGAATAATCAATTTCGAGCAACCGTGGAATTTAATGGACTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCAGAAAAGGATGCAGCAGCAGAGGCTCTTGAGTGGTTGATGGGTGGAAATCAGATGGGGCACGACTATGTCAACCAAATGTCTATGATGCTAAAAAGGAGCAAGAAGGATCATAACTAA 3792 42.96 MPFPLLLPHPLPSLQFHRPSPLPKTLKPPPPTFPMKDRTPSSNGAVYVPPHIRLRSVVTPSNNSSAVSAVDCKLKAAPASMLDSGTTASPCLHARSQELLPTGNSRFNSVQYDSACDDGAPVESWACNFECSHQSGFPPSVNIDLWKRKLALLLRDKEKQELISRDKKDRQDFEEIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLLRRVDEHLGEFLSQKSRCKGFQDISVSRSSSSGSIATDEGLFEQPEPQASSKAVMEKILWRRSSHLRDQQQAWQVIIISGETGCGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPFHSSMMTDLNVECSVLAPGFTHPVRTHFLEDILEMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKTQIASTVQDALMAADFKEYSLQTQESLSCWNPDCLGFNLIEYLLVRICESETPGAILVFMTGWDDISSLKEKLQFHPLLGDPCRVMLLACHGSMASSEQRLIFTEPDKGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQSKSFMFPQYFICDIYVQSAIKYVTVLGVREEEGLAVFNQENVTIYTLVNHWLQVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTIVAGLSVRDPFLTPLEKKDKCLSKFPVSLEVKELCLCSAAVIAMKVVNPFLLYPARIEMRPLLPIESNLTISGNLFDGGSFEANVNCNPIFKEREKAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNFGAYDFCWKNFLSIQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNVWSLDEQLIRAVICYGLYPGVCSVVHNEKSFSLKTMEDGQVLLYSVGMFFNRLYNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDREGHLKMLGGFLEFFMKPDLAETYQKLRMELEELIQVKLLNPKMDFHSHHELLSAVRLLISEDQCEGRFVFGCQILQQPSKTSAPAAAPTAVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGNQMGHDYVNQMSMMLKRSKKDHN 1263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2233831 2247936 - Lsi04G002130.1 Lsi04g00213 660262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00213 1263 Pfam Helicase associated domain (HA2) 744 908 IPR007502 GO:0004386
Lsi04g00213 1263 Pfam DEAD/DEAH box helicase 298 440 IPR011545 GO:0003676|GO:0005524
Lsi04g00213 1263 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 457 IPR014001 -
Lsi04g00213 1263 PANTHER ATP-DEPENDENT RNA HELICASE 888 1187 - -
Lsi04g00213 1263 MobiDBLite consensus disorder prediction 14 41 - -
Lsi04g00213 1263 MobiDBLite consensus disorder prediction 14 36 - -
Lsi04g00213 1263 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 738 813 - -
Lsi04g00213 1263 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 296 688 - -
Lsi04g00213 1263 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 976 1067 IPR011709 -
Lsi04g00213 1263 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 114 291 - -
Lsi04g00213 1263 Gene3D - 246 458 IPR027417 -
Lsi04g00213 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 811 IPR027417 -
Lsi04g00213 1263 CDD DEXHc_RHA-like 297 456 - -
Lsi04g00213 1263 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1174 1239 IPR014720 -
Lsi04g00213 1263 PANTHER ATP-DEPENDENT RNA HELICASE 738 813 - -
Lsi04g00213 1263 Pfam Double-stranded RNA binding motif 1175 1237 IPR014720 -
Lsi04g00213 1263 Gene3D - 739 845 - -
Lsi04g00213 1263 CDD SF2_C_RHA 479 687 - -
Lsi04g00213 1263 Pfam Helicase conserved C-terminal domain 564 663 IPR001650 -
Lsi04g00213 1263 PANTHER ATP-DEPENDENT RNA HELICASE 114 291 - -
Lsi04g00213 1263 SMART ultradead3 266 469 IPR014001 -
Lsi04g00213 1263 PANTHER ATP-DEPENDENT RNA HELICASE 296 688 - -
Lsi04g00213 1263 SUPERFAMILY dsRNA-binding domain-like 1170 1252 - -
Lsi04g00213 1263 Gene3D - 561 691 IPR027417 -
Lsi04g00213 1263 SMART ha2_5 743 910 IPR007502 GO:0004386
Lsi04g00213 1263 Gene3D - 1158 1241 - -
Lsi04g00213 1263 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 562 752 IPR001650 -
Lsi04g00213 1263 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 888 1187 - -
Lsi04g00213 1263 SMART DRBM_3 1175 1238 IPR014720 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00213 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 1269.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00190 Lsi-Chr4:2019089 Lsi04g00213 Lsi-Chr4:2233831 0 dispersed
Lsi04g00213 Lsi-Chr4:2233831 Lsi05g00151 Lsi-Chr5:2180594 4.26E-16 dispersed
Lsi01g01931 Lsi-Chr1:24367847 Lsi04g00213 Lsi-Chr4:2233831 4.81E-17 transposed
Lsi08g00027 Lsi-Chr8:677714 Lsi04g00213 Lsi-Chr4:2233831 1.72E-19 transposed
Lsi11g00092 Lsi-Chr11:948564 Lsi04g00213 Lsi-Chr4:2233831 1.03E-10 transposed
Lsi04g00213 Lsi-Chr4:2233831 Lsi06g01305 Lsi-Chr6:23612871 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00213 Lsi_Chr04 FPKM 3.12505 3.581075 1.777802 1.720598 8.364803 7.910382 8.311364 12.516097 13.083794 11.605556