Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00216 ATGGCCGATTCCGCTGAAGAATTTGAGCCCTTGTTCGATTACAGCCGTGTTCAGCCTCGCTCCCTTGTTTTTCTCGATGACGAGGATTCAGACGCAGACAAATCTCCGGCACCTTTTTCAAAGCGAGTGAAGATTGTAAATCCGGCGGTTACGAATTTGGTGAATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTACCTCCTCCACCGAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTATTCCAACTTAGTGGTATGCATCTATTGTTTGGTTAATCCATTAATATATGAAACTGGAACTCTTGTTCGTTCTGTCCATAAGCTGCCATGGCATGTGTTTCATGCCATTTTGCCTTTGTATATCATGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCGGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAAAGTAGATGTTGGAAACACGCCCCAGGACTCCCTGGAGCCTGATTTGGATGACCAAACTCCAATTGCTTCTAAAGAAAGAGCAAAGATTGTTATTTCTGTACGAGACAGTGACAAGGAAGAGCTCAAACAGTTTCGCCTGTTTGTGGATGACAAGTTTGAGCGACTTTTCAACATTTATGCGGACAAGCTTAAAATCGTCGACCCTAAGAGTTTGGTTTTCATTTTTGACGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTGAACATCAAGTCGAGTTGA 810 43.58 MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKEKQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLVRSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDLDDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2266091 2268645 - Lsi04G002160.1 Lsi04g00216 660265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00216 269 Gene3D - 181 266 - -
Lsi04g00216 269 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 139 269 - -
Lsi04g00216 269 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 1 99 - -
Lsi04g00216 269 SUPERFAMILY Ubiquitin-like 182 266 IPR029071 -
Lsi04g00216 269 CDD Ubl_SUMO_like 193 264 - -
Lsi04g00216 269 Pfam Ubiquitin-2 like Rad60 SUMO-like 194 266 IPR022617 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00216 - - - csv:101214853 372.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00216 Lsi-Chr4:2266091 Lsi05g00573 Lsi-Chr5:7127089 8.18E-06 dispersed
Lsi04g00216 Lsi-Chr4:2266091 Lsi10g01571 Lsi-Chr10:20183861 9.85E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g368 . . . . . Bpe10g01017 . . Cmo04g01554 Cmo18g00999 . . Car04g01539 Car18g00913 Sed06g1940 Cpe09g00326 Cpe01g01322 Bhi07g01278 Tan04g0805 Cmetu10g1169 Lac13g0538 Hepe01g1158 . . Cla05g02267 Cam05g2437 Cec05g2458 Cco05g2501 Clacu05g2432 Cmu05g2295 Cre05g2413 Cone13ag0798 . . . Lsi04g00216 Csa05g02650 Chy10g01182 Cme10g00221 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007696 1 1 0 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 4 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00216 Lsi_Chr04 FPKM 8.684874 8.402482 12.848516 11.833779 14.076373 14.75546 12.957792 6.270722 7.939165 5.936361