Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00222 ATGACTTCCGGCGGCGGCGGCGGCCAGGTTGAAGTCAAAGGAGTGTTTACAGGAGCAGGTTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTAGTGGCTTTTGGCGCTCAAAACGCCGTCTCCATCTTCTCTCCTAAGTCTGCACAAATTTTGACGACCCTTCCCGGTCACAACGCCTCTGTGAACTGCACTCATTGGCTTCCAAGTAACAAGTTTTTGTTTAGAGCCAAGCATTTGCAGTGTCATTATCTGCTATCTGGTGACTCTGATGGTGCCATTCATTTATGGGAGTTGTCTCTTCTGGACCAGAAGTGGAGAAATGTTCTACAACTACCAAAATCACACAAGAAAGGCATCACATGTATTACTGCACACGTAATTTCTGAAATGGTGGCGATTGTTGCGTCTGCTTCTTCAGATGGTTCAATTTGTGTTTGGGAGGTTGCTTTTCCGTCTACCAAAGATGGTGATTGTACATTGTTGTTGCTGGACTCGCTCATGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGTCAGTCATATGGTCCTGGCTATGGGAGGCTTGGATAATAAGATTCATCTGTATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAGCTCAAAGGACATACAGATTGGATTAGAAGTCTGGACTTCTCTTTGCCTATGGGGAAAAATGGAGAAGCAAACAGCATTATGCTTGTAAGTTCATCTCAGGACAAAGGAATACGCATATGGAAGATGGCTCTTCATGGTTCTTCAGCTGACAAAAATGGAGGATGCGAAAAAGAAGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCCGGACCATTAACTTATCAGGTGTCATTAGAATCACTTTTGATTGGACATGAGGATTGGGTATATTCGGTCCAATGGCAGCCGCCTTCAGCTTCAGAAACAGAAGGGGTTCCATGCTATCAATCTGAAAGCATCCTATCTGCATCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACCGTTGGAGAGTTAAGTCATTGTGCTTTAGGGTTTTATGGTGGGCATTGGAGCCCCAATGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCCTTCCATCTCTGGAAAAATGTTGGTATCAGTTCAGATAACTGGAAACCTCAAAAGGTTCCCTCAGGACATTTTGCTGCTGTCATGGATATTTCATGGGCCAGATCTGGTGATTATATTATTTCAGTCAGCCATGACCAGACAACTCGGATTTTTGCTCCCTGGAAAAATGTCAATTCTCTTGAAGGAGGTTCTTGGCATGAAATTGCTCGACCTCAAGTTCATGGTCATGATATTAATTGTGTCACCATAATACAAGGGAAGGGGAACCATCGCTTTGTCAGCGGAGCTGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTTTGAAGACATTGAGTCACGCCACACTGCAGAATTTTATGGCGACTGAAGATCACCTTGTGGATGTTCAGATTTTGGGTGCTAATATGTCCGCTCTTGGCCTTTCACAGAAACCTATTTATGTTCACTCTGCTGATAAGACACCAGACAGGAGTGGAAATGAAGGTATTGACACCCTTGAAACCATTCCTGATGCAGTTCCTGTCGTTCTTTCTGAACCTCCCATTGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTGCTCTATGTTGTGATCACAAGGGGAAGCTTGTTGCTTCATCCTGTAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCATGGAAGGCAGTCAGTCGTTTGCAATCTCACAGCTTAACAATAACGCAAATGGAGTTTTCCCATGATGACAGTATGCTATTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTCAAAATCCAGAGAACAGGAAATGTAGGCTCTGATGAAACCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCACATGGTCATGAGTTTGCAACAGGCTCTAGAGATAAGACTGTGAAGATATGGGCTGTGACAGCTGAATCTTCAGTTAAGCAGCTAACAACTTTGTCACAGTTCAAATCTAGTGTCACCGCTTTATCGTGGGTCGGTCTTGATCCCACAAACAATGGATTCCTTGCAGTTGGAATGGAAAATGGCCTCCTTGAGTTGTGGAGTTTGTCTATCAAAAGAACAGATAATGTTTGCTCAAATGTAGTTGCTTCGGTCACTATACGCCTCGATCCATTTGTTTGCCATGTTTCCTCGGTCAACCGTTTGGCATGGAAGGAACCGGAGAAGATTGGTGAAGAATGCAGGAAGCTGCAACTTGCATCCTGTGGCGCTGACCACTGTGTTAGAGTGTTTGAGGTAAATGTTTCTGTATGA 2532 43.6 MTSGGGGGQVEVKGVFTGAGCNRIVNNVSWGACDLVAFGAQNAVSIFSPKSAQILTTLPGHNASVNCTHWLPSNKFLFRAKHLQCHYLLSGDSDGAIHLWELSLLDQKWRNVLQLPKSHKKGITCITAHVISEMVAIVASASSDGSICVWEVAFPSTKDGDCTLLLLDSLMVGSKSMVALSLAELPGNVSHMVLAMGGLDNKIHLYCGKRTGEFVKACELKGHTDWIRSLDFSLPMGKNGEANSIMLVSSSQDKGIRIWKMALHGSSADKNGGCEKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSVQWQPPSASETEGVPCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGISSDNWKPQKVPSGHFAAVMDISWARSGDYIISVSHDQTTRIFAPWKNVNSLEGGSWHEIARPQVHGHDINCVTIIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLQNFMATEDHLVDVQILGANMSALGLSQKPIYVHSADKTPDRSGNEGIDTLETIPDAVPVVLSEPPIEDQLAWHTLWPESHKLYGHGNELFALCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVSRLQSHSLTITQMEFSHDDSMLLAVSRDRQFSVFKIQRTGNVGSDETHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTAESSVKQLTTLSQFKSSVTALSWVGLDPTNNGFLAVGMENGLLELWSLSIKRTDNVCSNVVASVTIRLDPFVCHVSSVNRLAWKEPEKIGEECRKLQLASCGADHCVRVFEVNVSV 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2315617 2322316 - Lsi04G002220.1 Lsi04g00222 660271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00222 843 Pfam WD domain, G-beta repeat 53 100 IPR001680 GO:0005515
Lsi04g00222 843 Pfam WD domain, G-beta repeat 694 724 IPR001680 GO:0005515
Lsi04g00222 843 Pfam WD domain, G-beta repeat 305 349 IPR001680 GO:0005515
Lsi04g00222 843 Pfam WD domain, G-beta repeat 219 260 IPR001680 GO:0005515
Lsi04g00222 843 Pfam WD domain, G-beta repeat 407 444 IPR001680 GO:0005515
Lsi04g00222 843 Pfam WD domain, G-beta repeat 116 150 IPR001680 GO:0005515
Lsi04g00222 843 Gene3D - 403 550 IPR015943 GO:0005515
Lsi04g00222 843 Gene3D - 289 402 IPR015943 GO:0005515
Lsi04g00222 843 Gene3D - 684 842 IPR015943 GO:0005515
Lsi04g00222 843 Gene3D - 24 288 IPR015943 GO:0005515
Lsi04g00222 843 PANTHER WD REPEAT-CONTAINING 9 841 - -
Lsi04g00222 843 SUPERFAMILY WD40 repeat-like 689 839 IPR036322 GO:0005515
Lsi04g00222 843 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515
Lsi04g00222 843 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 693 724 - -
Lsi04g00222 843 Gene3D - 578 683 IPR015943 GO:0005515
Lsi04g00222 843 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Lsi04g00222 843 PRINTS G protein beta WD-40 repeat signature 712 726 IPR020472 -
Lsi04g00222 843 PRINTS G protein beta WD-40 repeat signature 138 152 IPR020472 -
Lsi04g00222 843 ProSiteProfiles Trp-Asp (WD) repeats profile. 693 734 IPR001680 GO:0005515
Lsi04g00222 843 PANTHER ELONGATOR COMPLEX PROTEIN 2 9 841 - -
Lsi04g00222 843 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 36 730 IPR011047 -
Lsi04g00222 843 SMART WD40_4 213 260 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 359 398 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 298 349 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 791 838 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 457 498 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 51 101 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 731 774 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 587 631 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 406 445 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 108 151 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 634 673 IPR001680 GO:0005515
Lsi04g00222 843 SMART WD40_4 686 725 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00222 K11374 ELP2; elongator complex protein 2 - csv:101209018 1593.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00222 Lsi-Chr4:2315617 Lsi03g01895 Lsi-Chr3:30332806 6.27E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00222 Lsi_Chr04 FPKM 22.454817 24.24259 28.219864 26.736328 38.371159 34.068516 38.701645 25.607159 26.389309 27.248739