Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00223 ATGGAGAGTAATAATAATAATAATAATGAGTTGATTATGAACAACTCTGTTTATTGTGAAGGGAAAGGGGAAAATGGGATAATAGATTTGGGGTTGAGCTTAAGAACTTTGGAGCAGCCAGAAGTGGGAATAGAAGGAGGAGGAGGGTACATGAATTGGGGAGGACATGAAGAAGATTACTATTGTTGTAGTAATGAGGAAGATGCAGAGGTTGTGCAGAGCAAACAACAACAGCAGAGGTGGGCTTATGTTAAAGTCAATATGGATGGTGTCATTGTTGGTAGGAAAGTTTGCATCTTTCAAAATGCTACCTATTCCACTCTTGCCCTTCAACTTGAAGATATGTTTGGTCGACAATGTGAATCTGGACTGAGGCAATTCGTGGAAGGTGTGAAGAGGCTAAGAATTGCTAGGAAAGATGAGGCTTTTGTTGTTATTCATCAAAATTAG 450 39.33 MESNNNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2325985 2329161 + Lsi04G002230.1 Lsi04g00223 660272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00223 149 Gene3D - 75 123 - -
Lsi04g00223 149 Pfam AUX/IAA family 65 118 IPR033389 -
Lsi04g00223 149 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 127 IPR003311 GO:0005634|GO:0006355
Lsi04g00223 149 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 8 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00223 K14484 IAA; auxin-responsive protein IAA - csv:101209262 233.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00223 Lsi-Chr4:2325985 Lsi05g01052 Lsi-Chr5:18042116 3.03E-07 dispersed
Lsi04g00223 Lsi-Chr4:2325985 Lsi09g01192 Lsi-Chr9:19160403 2.32E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g355 . . . . . . Bma14g01909 . Cmo04g01561 Cmo18g01005 . Cma18g00996 Car04g01543 Car18g00919 Sed07g2115 Cpe09g00321 Cpe01g01328 Bhi07g01287 Tan04g0813 Cmetu10g0970 Lac13g0531 . . . Cla05g02274 Cam05g2444 Cec05g2465 Cco05g2509 Clacu05g2439 Cmu05g2302 Cre05g2420 Cone13ag0802 Cone19ag0807 . . Lsi04g00223 Csa05g02642 Chy10g01175 Cme10g00229 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009364 0 1 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25113 PF02309 AUX_IAA 4.50E-11 CL0072 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00223 Lsi_Chr04 FPKM 27.797787 30.313351 14.951762 15.255466 23.433863 24.379253 24.063883 14.581903 14.174073 14.194047