Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00224 ATGGCAAAATTTCCTTCAATTCCCCTGTTTTTTCTCCTCTGCAACTTATGCCTTTCCATGGCTTCCTTGAACGATGAGGGCAATGCCCTTTTATCATTCAAACAATCCATTACTGAAGACCCAGAGGGCAGTTTCAGCAACTGGAATTCTTCAGATGAAACTCCATGTGGTTGGAATGGAGTTACATGCAAGGATCTAAGAGTTGTTTCTCTTAGTATTCCTAAGAAGAAACTTAATGGGGTTCTTCCTTCTTCTCTGGGGTTTCTGTCTGAGCTTCGTCATGTGAATCTCAGGAGTAATAAACTCCATGGAACCTTGCCAGTGGAGCTTTTTCAAGCTAATGGAATTCAAAGTTTGGTGCTTTATGGAAATTCCTTCACTGGGTCTGTACCAAATGAGATTGGTAAGCTAAAAAACCTTCAAATCTTGGATTTGTCTCAGAATTTCTTTAATGGGTCCTTGCCTGTTTCCTTAATGCAATGCACAAGGTTGAGAATTCTTGATCTTAGTCAGAACAATCTTACCAATTCTCTGCCTAATGGGTTTGGTTCCAGTTTGAATTTCTTGGAAACTTTGGATCTTTCTTACAATAAGTTTAATGGTTCCATTCCCATGGATATTGGTAATTTGTCTAGCTTACAAGGCACTGTTGATTTCTCACATAATTTGTTTTCTGGCTCTATCCCAGCCAGCCTGGGAAACCTTCCTGAAAAGGTTTACATTGATCTTACTTATAATAATTTGAGTGGTTCAATACCCCAAAATGGTGCTCTTATGAACAGAGGGCCAACTGCTTTTATTGGAAATCCTGGTCTTTGTGGACCGCCGTTGAAGAACCCTTGTTCTTCTGAAACTCCAGGCGCGAGTTCCCCGTCCTCGTTCCCCTTTTTCCCAGACAATTATCCACCTGGGAGTTCTGAGGGCAATGTTAATAAGTATGACAAAGGAGGGCTGAGTAAGAGCACTTTGGTTGCAATAATCATCGGCGACATTGTCGGTATTTGCCTGATCGGTTTGCTGTTTTCGTATTGCTATTCGAGGTTTTGCACTCATAGAAATGGGAAGAAGGCAGACCAATCTAATTATGGATTTGAGAAGGGTGAAAAAGGAAGAAAGGACTGTCTCTGCTTTCAGAAGGGCGAATCCGAGAACGTTTCAGAGCATATCGAGCAATTTGATTTGGTACCATTGGATTCACAAGTGACGTTTGATCTCGACGAACTTCTCAAGGCATCAGCATTTGTTTTGGGAAAAAGCGGTATCGGAATCGTGTATAAAGTTGTGCTTGAAGATGGACTAACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCTCAAAGATTAAAAGAATTTCAAACTGAAGTTGAAGCAATTGGGAAGTTGAGGCATCCAAATGTTGTTAGCCTTAGAGCATATTATTGGTCTGTTGATGAGAAACTGCTTATTTATGATTACATACCAAATGGGAACCTTGCATCTGCCATTCATGGGAAGCCCGGAACAACATCGTTTACACCGCTACCGTGGTCTGTTCGGTTTAAAATCATGAAAGGCATTGCGAAAGGGTTAGTTTACTTGCACGAGTTTAGCCCCAAAAAGTATGTTCATGGTAATTTGAAAACGAACAACATACTTCTTGGACACGACATGACACCACATATTTCTAATTTCGGGCTCGCCCGCCTTGTTAACATTGCTGGAGGATCACCAACCGTGCAATCGAGTCATATAGCAGAAGAAAAACCACAAGAGAAACAACTAAAGTCTGCCACCTCTGAAACTAGTACATTCAGTTCTAGCATGAGTACTTACTACCAAGCCCCAGAAGCGTTCAAAGTCGTTAAGCCATCACAGAAATGGGACGTTTATTCGTACGGTGTGATATTACTCGAAATGATCACCGGAAGGCTGCCCATAGTTCAAGTGGGAGCATCGGAAATGGATCTTGTTCAATGGATTCAACTCTGCATTGAGGAAAAGAAGCCGCTTTCAGACGTGATAGACCCGTCTTTGGCTCCGGATGACGATGCAGACGAGGAGATTATTGCGGTTTTGAAGATAGCATTAGCTTGTGTTCAAAATAGTTCAGAAAGAAGACCTGCAATGAGACATGTTTGTGATGGTTTGAGCAGGTTGGGTGTGACTCCAAACTGA 2154 41.88 MAKFPSIPLFFLLCNLCLSMASLNDEGNALLSFKQSITEDPEGSFSNWNSSDETPCGWNGVTCKDLRVVSLSIPKKKLNGVLPSSLGFLSELRHVNLRSNKLHGTLPVELFQANGIQSLVLYGNSFTGSVPNEIGKLKNLQILDLSQNFFNGSLPVSLMQCTRLRILDLSQNNLTNSLPNGFGSSLNFLETLDLSYNKFNGSIPMDIGNLSSLQGTVDFSHNLFSGSIPASLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSETPGASSPSSFPFFPDNYPPGSSEGNVNKYDKGGLSKSTLVAIIIGDIVGICLIGLLFSYCYSRFCTHRNGKKADQSNYGFEKGEKGRKDCLCFQKGESENVSEHIEQFDLVPLDSQVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRLKEFQTEVEAIGKLRHPNVVSLRAYYWSVDEKLLIYDYIPNGNLASAIHGKPGTTSFTPLPWSVRFKIMKGIAKGLVYLHEFSPKKYVHGNLKTNNILLGHDMTPHISNFGLARLVNIAGGSPTVQSSHIAEEKPQEKQLKSATSETSTFSSSMSTYYQAPEAFKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLAPDDDADEEIIAVLKIALACVQNSSERRPAMRHVCDGLSRLGVTPN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2329328 2332527 - Lsi04G002240.1 Lsi04g00224 660273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00224 717 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lsi04g00224 717 SMART LRR_typ_2 137 161 IPR003591 -
Lsi04g00224 717 SMART LRR_typ_2 89 113 IPR003591 -
Lsi04g00224 717 SMART LRR_typ_2 162 184 IPR003591 -
Lsi04g00224 717 SMART LRR_typ_2 186 210 IPR003591 -
Lsi04g00224 717 Gene3D Transferase(Phosphotransferase) domain 1 486 715 - -
Lsi04g00224 717 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 9 713 - -
Lsi04g00224 717 ProSiteProfiles Protein kinase domain profile. 410 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00224 717 CDD STKc_IRAK 416 712 - -
Lsi04g00224 717 Pfam Leucine Rich Repeat 163 183 IPR001611 GO:0005515
Lsi04g00224 717 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Lsi04g00224 717 Gene3D Ribonuclease Inhibitor 183 283 IPR032675 -
Lsi04g00224 717 SUPERFAMILY L domain-like 24 278 - -
Lsi04g00224 717 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 713 - -
Lsi04g00224 717 Pfam Protein kinase domain 416 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00224 717 Gene3D Phosphorylase Kinase; domain 1 378 485 - -
Lsi04g00224 717 SUPERFAMILY Protein kinase-like (PK-like) 415 707 IPR011009 -
Lsi04g00224 717 MobiDBLite consensus disorder prediction 573 593 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g00224 Lsi09g00625 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00224 Lsi-Chr4:2329328 Lsi01g01628 Lsi-Chr1:14646194 1.27E-93 dispersed
Lsi01g01904 Lsi-Chr1:22626401 Lsi04g00224 Lsi-Chr4:2329328 8.51E-137 transposed
Lsi03g00425 Lsi-Chr3:4811829 Lsi04g00224 Lsi-Chr4:2329328 0 transposed
Lsi04g00668 Lsi-Chr4:6110513 Lsi04g00224 Lsi-Chr4:2329328 0 transposed
Lsi05g00235 Lsi-Chr5:3107681 Lsi04g00224 Lsi-Chr4:2329328 1.08E-135 transposed
Lsi10g00183 Lsi-Chr10:3040323 Lsi04g00224 Lsi-Chr4:2329328 1.51E-135 transposed
Lsi04g00224 Lsi-Chr4:2329328 Lsi09g00625 Lsi-Chr9:6888963 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83550 PF00069 Pkinase 8.60E-29 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00224 - - csv:101215811 1330.47