Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00228 ATGGCACTTTCAGCTATTGTTTTGGCCACCATCACTTCTCTCCATCTCATAGCCTTCGTCCTCGCCGTCGGCGCCGAGCGCCGCCGCAGCACCGCTAAGGTTGTGCCAGATGAGTACGATGAAAAGACTTATTGTGTGTACGGCACCGACGCATCGACGGTGTACGGATTATCGGCGTTCGGTTTACTTCTGATAAGCCAGGTGGTGGTTAACGGCGTTACTAGATGTTTCTGCTGTGGGAAAGGTTTAATTAGTGGAAAAATCACCACTGTCGCCATTTTCTTCTTTGTCTTTTCTTGGTATGTATATCAAAATTGA 318 48.11 MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVYQN 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2348394 2349607 - Lsi04G002280.1 Lsi04g00228 660277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00228 105 PANTHER AEROBIC COPROPORPHYRINOGEN-III OXIDASE (DUF1218) 3 102 - -
Lsi04g00228 105 PANTHER OS07G0462200 PROTEIN-RELATED 3 102 - -
Lsi04g00228 105 Pfam Protein of unknown function (DUF1218) 59 102 IPR009606 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00228 - - - csv:101216289 192.586
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00228 Lsi09g00623 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00228 Lsi-Chr4:2348394 Lsi04g01317 Lsi-Chr4:20936166 6.83E-25 dispersed
Lsi04g00228 Lsi-Chr4:2348394 Lsi09g00623 Lsi-Chr9:6868209 1.11E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g351 . . . Bda11g00161 . . . . Cmo04g01564 . . . Car04g01545 . Sed07g2111 . Cpe01g01331 Bhi07g01289 Tan04g0818 Cmetu10g0877 Lac13g0528 Hepe01g1166 . . Cla05g02277 Cam05g2448 Cec05g2469 Cco05g2513 Clacu05g2443 Cmu05g2305 Cre05g2423 Cone13ag0804 Cone19ag0809 . . Lsi04g00228 Csa05g02061 Chy10g01172 Cme10g00232 . . . Bda11g00161 . . . . . . Cmo15g01032 . Cma15g00987 . Car15g00927 Cpe13g00392 . Bhi12g00840 . . . . . Lcy10g1470 Cla01g00575 Cam01g0601 Cec01g0592 Cco01g0616 Clacu01g0594 Cmu01g0567 Cre09g1940 Lsi09g00623 . Chy09g00598 Cme09g01422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003213 0 2 1 1 0 2 2 2 2 2 2 2 1 2 2 1 2 2 2 2 2 2 1 2 2 3 1 2 3 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00228 Lsi_Chr04 FPKM 7.331606 10.201876 2.15338 2.621026 3.172611 5.052699 4.421244 26.990685 30.21084 30.636162