Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00233 ATGGATAAAAGTAAGATTTTGTGGATTGCACTAGTTCCAATAGCTTTAGGAAGCATTATTATGGTAATCTCCACCATCAACTTCATCTCCAACAAAAGAAAAAGCATGTCAAACGAAAACAAAATTAATGAAATCATTGGGAGATATTCAACCCACACCCCCAAGCATTACAGTTACTCAAAGCTAAAGAAAATCACAGAGTCCTTCAAGACCAAGCTTGGCCAAGGAGGATTCAGCTCTGTCTACAAAGGAAAGTTACCTGATGGTCGTGAAGTGGCAGTGAAAGTGTTGAATGAATCCAATGATAACGGTGAAGACTTTATGAATGAAGTGGTCAGCATCACCAAAACTGCACACGTAAACATAGCCACTCTCTTAGGTTTCTACTATGAGCAGGGGAAAAGAGCTTTAGTTTATGAGTATATGCCTAAAGGGTCATTAGAAAAGTACATATTTCATAGAGGGCAGCAGAGAGAAAATGAAACAGTGTTAGATTGGAACATGTTGTATAACATAGTTATAGGTGCGGCTCGAGGATTAGAGTACTTGCATCGAGGCTGCAACACAAGGATTTTGCATTTTGATATCAAACCACACAACATTCTTTTAGACAATGAGTTCTGTCCCAAAATCTCAGATTTTGGGCTTGCCAAGCAATGCAAGGCTAGAGAGAGTCGTGTGTCGATGACAGGTGTGAAAGGGACTGCAGGATTTATGGCACCAGAAGTATTATTTAGAAATTTTGGCAAAGTTTCACACAAGTCTGATGTTTATAGTTTTGGAATGTTGGTTCTTGAGATGGTGGGTGAAAGAAAGAGACCTGATGAATTAGGAGTGGGAGAGAGCAAAGAAGAGTACTTTCCAGATTGGATATATAAGAATCTGGAAAGAAGTGATGTGGATGAAGGGCTTTGGTGGGGTAACACAGAGGAAGAAGAAGAAAGTGCAAGAAAAATGATAATTGTAGGATTATGTTGCATCCAGACATTGCCGGAAGAGAGGCCATCAATGAGTGTTGTGGTGGCTATGTTGGAAGGTAGTGTTTTGGTTAGCAAGCTTGATTTAATTATTATCCTTCCAATGAAACGAAATGAATTTGGGTACGCCGATCCAAGACTCAAGACCTTAATTTCCTAA 1137 39.49 MDKSKILWIALVPIALGSIIMVISTINFISNKRKSMSNENKINEIIGRYSTHTPKHYSYSKLKKITESFKTKLGQGGFSSVYKGKLPDGREVAVKVLNESNDNGEDFMNEVVSITKTAHVNIATLLGFYYEQGKRALVYEYMPKGSLEKYIFHRGQQRENETVLDWNMLYNIVIGAARGLEYLHRGCNTRILHFDIKPHNILLDNEFCPKISDFGLAKQCKARESRVSMTGVKGTAGFMAPEVLFRNFGKVSHKSDVYSFGMLVLEMVGERKRPDELGVGESKEEYFPDWIYKNLERSDVDEGLWWGNTEEEEESARKMIIVGLCCIQTLPEERPSMSVVVAMLEGSVLVSKLDLIIILPMKRNEFGYADPRLKTLIS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2365434 2368833 + Lsi04G002330.1 Lsi04g00233 660282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00233 378 ProSiteProfiles Protein kinase domain profile. 67 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00233 378 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Lsi04g00233 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Lsi04g00233 378 SMART serkin_6 67 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00233 378 Pfam Protein kinase domain 70 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00233 378 PANTHER - 31 348 - -
Lsi04g00233 378 PANTHER RUST RESISTANCE KINASE LR10-RELATED 31 348 IPR045874 GO:0004672
Lsi04g00233 378 SUPERFAMILY Protein kinase-like (PK-like) 45 345 IPR011009 -
Lsi04g00233 378 Gene3D Phosphorylase Kinase; domain 1 38 141 - -
Lsi04g00233 378 Gene3D Transferase(Phosphotransferase) domain 1 142 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00202 Lsi-Chr2:1695225 Lsi04g00233 Lsi-Chr4:2365434 4.63E-114 dispersed
Lsi02g00204 Lsi-Chr2:1702821 Lsi04g00233 Lsi-Chr4:2365434 0 dispersed
Lsi04g00233 Lsi-Chr4:2365434 Lsi07g00925 Lsi-Chr7:11018421 3.61E-94 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83551 PF00069 Pkinase 2.80E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00233 - - bhj:120082139 608.986