Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00234 ATGAATACCGAATTCCATATGGCGTCATCCTTTTTCGTTTTGTCCTTTGTTCTCGCTCAGCTAGTAGCACTTTCGTTGGCTTGGAATGATAGCAGATACGTTCATCCACTTTGCCTGCCCTTCGAATGTGGAAATCTGGGCCTCATAGGATTCCCTTTTAACAACGTTTCGCTCACTGATTGCGGATTTTACACAGTTAAAAATTGTTCAGGACAGCCAAAAATCCAGCTGAATCGTGAAAAAGAACTATGGTTTGATGTTGTTGCCATATCTCAGGCTAATGTCATCCATATCAATGACTCAGAACTTCAGAAGCAAATAAATGATCGCAATTGTTCTATTCTAGACGATCTGGCTCTTCCAACGTCTCCTTCATCTTCTTTATCCACAGACAATAATCTTACTTTGTATAAATGCACAGAGAATCCTAAGGATGCACTTCCGCTTTTCGTCAGTTCGTTTAGTTGCCCTGGTTATTACACATACCTCAACACCAGTGCTTCACCCAACTGTTCCTCTTCCAAGTCTAAATTTTTTGTTCCAGTTCGCCCGGTTGGTCGCAATAACTCAGCTGTTGAGTTCACTTCTAATTTCCAACTTCAAGTGACAATATCCCTTCCTTGTTACCAATGTTTTCATCGCGGAGATAAAAGTAAGATTTTGTGGATTGCACTAGTTTGTCGAAGTGATCAAAACTCTGACTCCTGTTCCCCCTCCCTTTTGTTTCCAGGTGCTGGAGTCTCAGGTGTAATTCTGCTTTTGTTGTTATTTGCTCTTTGGTACCGCAGAAGAAGGCATGCTGCTCCAAATATCCTAACAAGGAATATATCTTGTGAACCCTACTCAAAATTCGACTTGGATGATGGTGGTGGTGTGTGCTTTGAAGTCCCCGTTTTCTCATATTGCGAACTCGAAAAGGCCACTAACAAATTTGATCGTGATAAAGAACTTGGAGATGGTGGTTTTGGAACCGTGTACCACGGCAAACTCCACGATGGTCGGGAAGTTGCTGTGAAACGCCTTTATCAACATAACTATAGACGAGTAGAGCAATTCATGAATGAGGTTAAAATTCTCACCCGCCTTCGCCATAAAAATCTTGTCTCCCTTTATGGATGTACTTCAAGACGCAGTCATGAACTTCTCCTTGTTTATGAATTTGTCCCAAATGGTACTGTTGCTGATCATCTCCATGGAGAACAAGCAAGTTCTAGCTTGCTCACGTGGCCTATTCGGATGAACATTGCCATTGAAACAGCAAGTGCTCTAGTTTATCTCCACGCTTCGGATATCATTCATCGTGATGTAAAGACTACTAACATTCTCTTAGACAACAATTTTTCTGTCAAAGTTGCTGATTTTGGGATCTCTAGATTATTCCCAAACGATGTTAGTCATGTCTCAACTGCTCCTCAAGGGACCCCAGGTTATGTGGATCCCGAGTATTACCAGTGTTATCAGCTTACAACCAAGAGTGACGTTTATAGTTTTGGTGTCGTATTAATCGAGCTTATATCATCAATGCCAGCTGTTGATATAACAAGACATCGGCATGAGATTAACTTGTCTAACTTAGCTGTGAACAAAATTCTAAGACAGGAAATTGACGAGCTGATTGATCCATGTCTCGGGTATCAATCGGATGAAAATGTTCGACGGATGATAATGGCAGTGGCTTGGCTAGCTTTTCTATGTCTGCAGCAAGACAAGGAAAGGCGACCTACAATGGAAGAAGCCTTGGAAACTTTGAAGAGGATTGAGAGTGGAGAAGAAAGTGAGAATTTGCAAGATAATAATGCACTGTTGAAGAGCTTTGATCCAGCTCCTTCTCCAGAGTATGATGAGATTCAGTTGTTGAAGAACAGAAGGCAGCAGTTGTCCCCTACTTCTGTTGCTGATAAATGGATCAGCTCAACTTCATTTGTCAGTGCTTCAACTTCAATATCATCTATCTCCTAA 1959 41.5 MNTEFHMASSFFVLSFVLAQLVALSLAWNDSRYVHPLCLPFECGNLGLIGFPFNNVSLTDCGFYTVKNCSGQPKIQLNREKELWFDVVAISQANVIHINDSELQKQINDRNCSILDDLALPTSPSSSLSTDNNLTLYKCTENPKDALPLFVSSFSCPGYYTYLNTSASPNCSSSKSKFFVPVRPVGRNNSAVEFTSNFQLQVTISLPCYQCFHRGDKSKILWIALVCRSDQNSDSCSPSLLFPGAGVSGVILLLLLFALWYRRRRHAAPNILTRNISCEPYSKFDLDDGGGVCFEVPVFSYCELEKATNKFDRDKELGDGGFGTVYHGKLHDGREVAVKRLYQHNYRRVEQFMNEVKILTRLRHKNLVSLYGCTSRRSHELLLVYEFVPNGTVADHLHGEQASSSLLTWPIRMNIAIETASALVYLHASDIIHRDVKTTNILLDNNFSVKVADFGISRLFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVNKILRQEIDELIDPCLGYQSDENVRRMIMAVAWLAFLCLQQDKERRPTMEEALETLKRIESGEESENLQDNNALLKSFDPAPSPEYDEIQLLKNRRQQLSPTSVADKWISSTSFVSASTSISSIS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2377209 2379983 + Lsi04G002340.1 Lsi04g00234 660283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00234 652 Gene3D Transferase(Phosphotransferase) domain 1 388 607 - -
Lsi04g00234 652 Pfam Protein kinase domain 312 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00234 652 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Lsi04g00234 652 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00234 652 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 20 637 IPR044652 -
Lsi04g00234 652 CDD STKc_IRAK 317 586 - -
Lsi04g00234 652 SMART serkin_6 311 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00234 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Lsi04g00234 652 Gene3D Phosphorylase Kinase; domain 1 290 387 - -
Lsi04g00234 652 SUPERFAMILY Protein kinase-like (PK-like) 294 584 IPR011009 -
Lsi04g00234 652 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 20 637 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00234 - - - csv:101216540 1074.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00234 Lsi-Chr4:2377209 Lsi07g00689 Lsi-Chr7:7422634 1.52E-139 dispersed
Lsi04g00232 Lsi-Chr4:2363600 Lsi04g00234 Lsi-Chr4:2377209 2.84E-128 proximal
Lsi03g00430 Lsi-Chr3:4888300 Lsi04g00234 Lsi-Chr4:2377209 1.91E-154 transposed
Lsi04g00234 Lsi-Chr4:2377209 Lsi06g01317 Lsi-Chr6:23754335 3.36E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g347 . . . . . . . . . Cmo18g01013 . Cma18g01002 . Car18g00924 . . . Bhi07g01296 . . . . . . Cla05g02281 . . . . . . . . . . Lsi04g00234 Csa05g02634 . Cme10g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007318 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83552 PF00069 Pkinase 1.20E-49 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00234 Lsi_Chr04 FPKM 3.197904 2.253891 9.405981 10.583255 2.834869 3.02581 3.097047 11.81042 9.166927 12.484674