Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00236 ATGGCTTCCAGAGAAGGGAGACGCCATCACCACCATCATCATCATCAGAATCTGGTGCCTCTTGCTGCTTTGATCAGTAAAGAGGTGAGGAGTGAGAGATTGGAGAAACCGACTGTAAGATATGGGAATGCAGCGCAGTCTAGAAAGGGGGAAGATTATTTTCTCGTGAAAACTGATTGTCAGCGAGTTTCTGGGAACCCTTCATCCACTTTCTCTGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCAGCAATTTACACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCATTGGTTGCTGGATTTGTTAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCTACATTTGTGATCATCGATGGATGGACGGTGACAGTAGCGTCGGTTGGAGATTCCCGATGTATTTTAGATACTCAAGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGACTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGCATTGTTGGTGGTGCTGAGATCGGCCCACTCCGTTGTTGGCCCGGAGGCTTATGCCTTTCTCGATCCATTGGAGACATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTCGTGAAACAAGTAAAGTTATCAAATGCAGGTGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGATGCCTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGAGGCTTGAAAGATGATACAACCTGCATAGTTGTAGACATAATTCCTCCTGATACTTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTACTATTCAGAAAAAAGTCTCACAGTTCTAATAAGCTATCCAAGAGGCTATCAGCCATCGGTTTCGTGGAAGAATTATTCGAAGACGGCTCCGCCATGCTGGCTGAAAGGCTTGGAACTGTAGAGTTGAGTGGATCTGGACATGGCACACCCAGCTTGTTCACTTGTGCTATATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGACGCTATGGAAGGAAAACGCCCCAGCGGGGTAAGAGTGGCATAG 1305 47.13 MASREGRRHHHHHHHQNLVPLAALISKEVRSERLEKPTVRYGNAAQSRKGEDYFLVKTDCQRVSGNPSSTFSVFAIFDGHNGNAAAIYTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDTSAQSSPLPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGFVEELFEDGSAMLAERLGTVELSGSGHGTPSLFTCAICQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2393547 2397364 + Lsi04G002360.1 Lsi04g00236 660285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00236 434 SMART PP2C_4 30 300 IPR001932 -
Lsi04g00236 434 Pfam Protein phosphatase 2C 66 287 IPR001932 -
Lsi04g00236 434 Gene3D - 41 309 IPR036457 -
Lsi04g00236 434 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 9 434 - -
Lsi04g00236 434 CDD PP2Cc 49 302 IPR001932 -
Lsi04g00236 434 PANTHER ALPHABET, ISOFORM E-RELATED 9 434 - -
Lsi04g00236 434 SMART PP2C_SIG_2 35 302 IPR001932 -
Lsi04g00236 434 ProSiteProfiles PPM-type phosphatase domain profile. 33 302 IPR001932 -
Lsi04g00236 434 SUPERFAMILY PP2C-like 46 302 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00236 Lsi-Chr4:2393547 Lsi06g00071 Lsi-Chr6:628499 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00236 - - csv:101216777 811.216