Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00237 ATGGCGGCGTCCACTCTGCTGTCGCATTTAGCTCTCTTTGTCTGTTTACTCCACTTTACATGTGTTTATACCTCTTCGAACCAAGATTTAGACGCTTTAATGGCGTTCAAAGCAGCGTCTGACAAAGGGAATAAGCTCACTACATGGAACTCTACCTCTAACCCATGTGCTTGGGATGGTGTTTCTTGCCTCAGAAACAGGGTCTCGAGGTTGGTTCTTGAGAATCTTGATCTTACAGGCTCTATCGGACCTCTTACTGCTTTGACTCAGTTACGAGTGCTGAGCCTCAAGCGGAACCGTCTCTCTGGTCCCATTCCCGATCTCTCCAACTTCAAAGCTCTCAAACTTGTTTTTCTTTCGTACAATGCATTTTCCGGTAACTTCCCGGCTTCTTTTCTGTCCCTCGTCCGGCTTTACCGTCTCGATCTCTCTCATAATAACCTGACCGGAGAGATACCGGCTTCTGTTAACCGTTTGACTCATCTTCTCACTCTCCGCCTCGAAGATAACCGATTTTCTGGTCCCATTTTGGAACTGAACCTGCTGAATCTTCAGGACTTCAATATTTCAGCGAACCGTCTCTCCGGCGAAATCCCCAAATCGTTGTCGGCATTTCCTGAGTCTTCTTTCGGTCAGAACATGGGCTTGTGTGGATCTCCTCTTCAGGGCTGCAAGAGCATTGTCAGTAACCCGACGGAACCCGGATCCGAAGGGGCAATTGCCTCGCCCATTACATCGCCGCGGAACCTCACGGTATCATCTTCTCCGACTTCCCTTCCCGGAGTTACAGCCGAAACAAAGCCGGAAAATACCCACCACCACGACAACGGTAAGATAGGTTCTCTAGCCCTAATCGCCATAATTCTCGGCGATGTTTTGGTGTTAGCGGTGGTCTCGCTTCTTCTCTACTGTTATTTCTGGAAAAACTCTGCTGACAAAGCCCGAGACGGGAAATCGAAGCTTCTGGAGAGCGAGAAGATTGTTTACTCTTCTAGTCCATATCCGGCTCAGGCCGGAACTGAGAGAGGCCGAATGGTGTTTTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGAAAAGGTGGGTTCGGAACTTCGTACAAGGCGATTCTCGACGACGGCAATGTGGTGGCGGTGAAACGGCTGAAAGATGCGCAGGTTGGAGGGAAACGAGAGTTCGAGCAGCACATGGAAGTATTGGGAAGGTTGAGACATGCCAATATAGTAAGCTTGAGAGCTTACTATTTTGCGAGAGAGGAGAAGTTATTGGTATATGATTACATGCCCAATGGCAGCTTGTTCTGGCTTCTTCACGGGAACAGAGGCCCTGGACGAACGCCGTTGGATTGGACGACGAGGTTGAAGATTGCCGCCGGAGCGGCTAGAGGATTGGCTTTCATTCACAATTCCTGCAAGTCCCTCAAGCTCGCACATGGCAATGTTAAATCCACCAACGTTCTTTTGGACCAATCGGGAAATGCTCGAGTCGCCGATTTCGGATTGTCACTTTTCACTCCCCCTTCCACTCCTCGGTCCAACGGCTACCGTGCACCGGAGTGCGGTGAGGGCCAGAAACTGACCCAGAAATCCGACGTGTACTCGTTTGGGGTTCTTCTCCTTGAGTTGCTCACCGGAAAGTGCCCCTCAGTCGTGGAGAATGGCGGGCCGGGAGGCGGTGGATACGGCAGCGTGTTGGATTTGCCACGGTGGGTTCAGTCGGTGGTGCGAGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAACTGATGAGATACAAAGACATTGAAGAGGAAATGGTGGGGCTTCTACAGATCGCCTTGGCTTGTACATCGGCTTCGCCAGATCAACGGCCGAAGATGAACCAGGTGGTGAAGATGATCGATGAGCTCCGTGGGGTGGAGGTGTCGCCGTTCCATGAGGGGTCTGACTCGGTGACAGAGTCGCCATCGGTGTCGGAAGGCACATGCGGCGGAGGAGCCAGTCAGTAA 2013 51.61 MAASTLLSHLALFVCLLHFTCVYTSSNQDLDALMAFKAASDKGNKLTTWNSTSNPCAWDGVSCLRNRVSRLVLENLDLTGSIGPLTALTQLRVLSLKRNRLSGPIPDLSNFKALKLVFLSYNAFSGNFPASFLSLVRLYRLDLSHNNLTGEIPASVNRLTHLLTLRLEDNRFSGPILELNLLNLQDFNISANRLSGEIPKSLSAFPESSFGQNMGLCGSPLQGCKSIVSNPTEPGSEGAIASPITSPRNLTVSSSPTSLPGVTAETKPENTHHHDNGKIGSLALIAIILGDVLVLAVVSLLLYCYFWKNSADKARDGKSKLLESEKIVYSSSPYPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHNSCKSLKLAHGNVKSTNVLLDQSGNARVADFGLSLFTPPSTPRSNGYRAPECGEGQKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGSVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSASPDQRPKMNQVVKMIDELRGVEVSPFHEGSDSVTESPSVSEGTCGGGASQ 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2405835 2408855 + Lsi04G002370.1 Lsi04g00237 660286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00237 670 Gene3D Ribonuclease Inhibitor 113 225 IPR032675 -
Lsi04g00237 670 MobiDBLite consensus disorder prediction 232 274 - -
Lsi04g00237 670 ProSiteProfiles Protein kinase domain profile. 361 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00237 670 SUPERFAMILY L domain-like 43 204 - -
Lsi04g00237 670 MobiDBLite consensus disorder prediction 645 670 - -
Lsi04g00237 670 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Lsi04g00237 670 Gene3D Phosphorylase Kinase; domain 1 336 436 - -
Lsi04g00237 670 PANTHER - 23 652 - -
Lsi04g00237 670 Coils Coil 670 670 - -
Lsi04g00237 670 MobiDBLite consensus disorder prediction 242 265 - -
Lsi04g00237 670 Pfam Protein kinase domain 364 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00237 670 Gene3D Ribonuclease Inhibitor 20 112 IPR032675 -
Lsi04g00237 670 MobiDBLite consensus disorder prediction 649 670 - -
Lsi04g00237 670 Gene3D Transferase(Phosphotransferase) domain 1 437 651 - -
Lsi04g00237 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 23 652 - -
Lsi04g00237 670 CDD STKc_IRAK 367 638 - -
Lsi04g00237 670 SUPERFAMILY Protein kinase-like (PK-like) 365 635 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00962 Lsi-Chr1:7807479 Lsi04g00237 Lsi-Chr4:2405835 3.25E-90 dispersed
Lsi03g01949 Lsi-Chr3:30886044 Lsi04g00237 Lsi-Chr4:2405835 1.08E-172 dispersed
Lsi04g00237 Lsi-Chr4:2405835 Lsi06g00909 Lsi-Chr6:18797364 1.02E-165 dispersed
Lsi04g01188 Lsi-Chr4:17704766 Lsi04g00237 Lsi-Chr4:2405835 4.90E-72 dispersed
Lsi04g00237 Lsi-Chr4:2405835 Lsi11g00286 Lsi-Chr11:2954323 1.54E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83553 PF00069 Pkinase 8.80E-34 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00237 - - csv:101217010 1229.93