Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00238 ATGTTAACCACGCTTACGCCCATTCATAATAGCCACGGTGGTGGTGCCGTCGCCGCTATGGCTGCTGCTTCTCCGGTGAACTCCTCAATGGAATCATGCTCCACAACCGTCGCCTTGGAATCTCCTATTCTCATCTTTCTCTTCTTTCACAAGGCAATACGTGCTGAGCTTGATCACTTCCATCGCGACGCCATCGAATTTGCCACTAACCACCAAACTGCCGGAGATATTGGGCCGTTGTTGCTGCGCTATCACTTCCTTCGAGCTGTTTATAAGCATCACTGTAACGCTGAGGACGAGGTCATCTTCCCGGCTCTAGATCTGCGAGTGAAAAATGTGGCAAGTACTTATTTCCTTGAACATGAAGGTGAAAGTGTTCTGTTTTGCCAATTGTTCGAGCTTCTGAATTCAAATGCGTTGGAGGAAGGGAGCTATAAGAGAGAGCTGTCATCTCGTGTCAGAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAAGAGGAACAGGTGTTCCCATTACTTACCGAGAAGTTTTCTTTCGAAGAACAGGCAGCATTGGTATGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCGTGGCTTTCTTCCTCTATATCTCCAGATGAGCATCAGATTATGTGCAAATGCCTGAGCAAAATTATCCCTGACCAAAAGCTTCTTCAGAAGGTCCAAGATCTTAAATGTATGCCAGAGAAGGGGAGTGACACTTCTGAATCAAGGAGAATTGGTAAAAGGAAATATGTGGAGCAAAGTAATTTTACCTATTCCACTGTTTCAGATGCTTGCCCCATCAACGAAATATTACATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATCGCTGAGGCTGCTAGGGACCTACCTTTGTCTTCTGATTTCTCTGAGTTGTCTGCACTTAAGGAGAGGCTGCAGTTTATTGCAGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTCCCTGCTGTAGATGCCGAACTGTCTTTTGCCGATCAGCATGCAGAAGAAGAAATTCAATTTGATAAGCTTAGGCACTTGATAGAAAGTATCCAAGCTGATAAAGCTAAATATTCTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAGAAGCACTTCCATGATGAGGAAATGCATGTTCTTCCACTTGCTCATAAGCATTTAGGACCCCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCTCTGAAATGGATAGAACGAGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAAGCAAGATCTTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCAGATCATGCACTTGTTACACTATTTTCTGGTTGGGCTTGCAAAGGCCATCCCAGGAGCATTTGTTTTTCTGCAAGTGCTATTAGCCATTGTCCTGAACAGATATTGACTGGAGATGAAGAATCATGCTCCTCCTTCTGTTCTGCCAATGAAAAACATTCATGCAATCTGGCAACCGTGTGTGCCAGGTCATCCAAGGATGGGAAGGCAGTATTCCATGGAGACTTAAATGGCCATCTTCTGTCGAAAAACCCAAGCAAAAAACTTCAATCCACTCGTGTAAAAGAATCTGCTTGTGTCCCTGGGCTAGGAGTGGATGACAATAATTTAGGAATGAGATCTATGGCAGCAGCAAAATCACTACGTTCTTTATGTCTTGGTCTCTATGCTCCTTCTCTCAACTCCAGTCTTTTTAGTTTGGAAACTGATCCAATCTCTGGTGGCAGTGGTTCTAAGTCACGGCCTATTGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTCGGTGATTGCAATGATACTTTCTTTAGGCAATTTTGCGGTAGGTTTTATCTGTTGTGGGGCCTGTATAAAGCTCATAGTAATGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTGAGCCACTCTTATACATTAGACCACAAACAAGAGGAAGAGCTGTTTGAAGGTATTTCTAGTGCACTTTCTAAGCTGACAAACGTTCGCAGAGACTTGAAAGATAAGACAAAGTGTAACAATTCAAATTGGATGAAGTCTCATACCTCTGATAGTTGTGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAGATCAATTAGAGTTACACTTGACCAACATATTTTCCGTGAGGAATCAGAATTGTTGCCGTTGTTCCATTCATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGACCTGCTACATCTCCACATCACGTGGAATCTGTCATTCATATATCTGGAGGTTCTGATTCCCATGGCGTCTGTGACCAAAAAAATGATTCGGTTTTCAAGCCGGGATGGAAAGAGATTTTTAGGATGAATGAAAATGAACTTGAATCAGAAATAAGAAAGGTTGCCCAGGATTCAACCATTGACCCTAGGAGAAAAGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAAATGCTACCCCAAGTCACTACAGGTGAAAACTCAGATGCAAGAGATCTGATCGCAAGTGCCCCATCATTTCGTGATCCTAGGGAACAGATTTATGGGTGTGAGCATTATAAAAGAAATTGTAAACTGCTTGCAACTTGTTGTGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCTCTGTCTCAAAGTTCAGCCCATTGGATCTGTTTGTACAACACCATCCTGTGGTGGCCTCTCTATGGCGAAGTACTACTGTGGTATTTGCAAACTTTTTGATGATGAAAGGGAAGTCTATCATTGTCCTTTCTGCAATTTATGTCGTCTTGGGAAGGGACTTGGTACTGACTTTTTCCATTGTATGACATGCAACTGTTGTTTGGCAATGAAGTTGGTTGATCATAAGTGCCAAGAGAGGAGCCTAGAAACAAATTGCCCTATCTGCTGTGATTTTTTGTTCACATCTAGTGAAAGTGTTAGAGCTCTCCCTTGTGGCCATTTCATGCATTCAGCTTGTTTCCAGGCTTACACATGTAGCCACTACATATGTCCAATATGTAGCAAGTCCTTGGGAGATATGACGGTATACTTCGGTATGCTCGACGCCTTACTGGCATTGGAGGTACTTCCTGAAGAATACAGGGAACGCTGTCAGGATATATTGTGCAACGACTGCTCCAAAAAGGGGAAAGCGCGCTTCCACTGGCTCTACCATAAATGTGGAAATTGTGGATCTTACAATACCAAGGTGATTAAGGTTAGCTCAAGTTCCTTCTCAACAATGAATTAG 3624 41.72 MLTTLTPIHNSHGGGAVAAMAAASPVNSSMESCSTTVALESPILIFLFFHKAIRAELDHFHRDAIEFATNHQTAGDIGPLLLRYHFLRAVYKHHCNAEDEVIFPALDLRVKNVASTYFLEHEGESVLFCQLFELLNSNALEEGSYKRELSSRVRALQISICQHMFKEEEQVFPLLTEKFSFEEQAALVWKFLCSIPINMLEVFLPWLSSSISPDEHQIMCKCLSKIIPDQKLLQKVQDLKCMPEKGSDTSESRRIGKRKYVEQSNFTYSTVSDACPINEILHWHNAIKKELNSIAEAARDLPLSSDFSELSALKERLQFIAEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDKLRHLIESIQADKAKYSSAEIHKKLSSHADQIIKTIQKHFHDEEMHVLPLAHKHLGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPVSDHALVTLFSGWACKGHPRSICFSASAISHCPEQILTGDEESCSSFCSANEKHSCNLATVCARSSKDGKAVFHGDLNGHLLSKNPSKKLQSTRVKESACVPGLGVDDNNLGMRSMAAAKSLRSLCLGLYAPSLNSSLFSLETDPISGGSGSKSRPIDNIFKFHKAISKDLEYLDNESVNLGDCNDTFFRQFCGRFYLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISSALSKLTNVRRDLKDKTKCNNSNWMKSHTSDSCDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHSYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQATRNTMFSDWLNEWWEGPATSPHHVESVIHISGGSDSHGVCDQKNDSVFKPGWKEIFRMNENELESEIRKVAQDSTIDPRRKDYLIQNLMTSRWIASQQMLPQVTTGENSDARDLIASAPSFRDPREQIYGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMLCLKVQPIGSVCTTPSCGGLSMAKYYCGICKLFDDEREVYHCPFCNLCRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERSLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYRERCQDILCNDCSKKGKARFHWLYHKCGNCGSYNTKVIKVSSSSFSTMN 1207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2412687 2422106 + Lsi04G002380.1 Lsi04g00238 660287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00238 1207 Gene3D - 1161 1204 - -
Lsi04g00238 1207 ProSiteProfiles Zinc finger CHY-type profile. 954 1023 IPR008913 GO:0008270
Lsi04g00238 1207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1084 1134 IPR013083 -
Lsi04g00238 1207 SMART ring_2 1090 1131 IPR001841 -
Lsi04g00238 1207 ProSiteProfiles Zinc finger RING-type profile. 1090 1132 IPR001841 -
Lsi04g00238 1207 Pfam Ring finger domain 1089 1131 IPR001841 -
Lsi04g00238 1207 CDD RING-H2_Pirh2 1089 1132 - -
Lsi04g00238 1207 CDD Hr-like 45 173 - -
Lsi04g00238 1207 CDD Hr-like 279 406 - -
Lsi04g00238 1207 Gene3D nmb1532 protein domain like 612 838 - -
Lsi04g00238 1207 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 32 1202 - -
Lsi04g00238 1207 SUPERFAMILY RING/U-box 1089 1136 - -
Lsi04g00238 1207 SUPERFAMILY CHY zinc finger-like 953 1017 IPR037274 GO:0008270
Lsi04g00238 1207 Gene3D nmb1532 protein domain like 278 423 - -
Lsi04g00238 1207 Gene3D nmb1532 protein domain like 41 193 - -
Lsi04g00238 1207 Pfam Zinc-ribbon 1137 1193 IPR039512 -
Lsi04g00238 1207 CDD Hr-like 621 777 - -
Lsi04g00238 1207 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 32 1202 - -
Lsi04g00238 1207 Pfam CHY zinc finger 961 1036 IPR008913 GO:0008270
Lsi04g00238 1207 Pfam Hemerythrin HHE cation binding domain 617 778 IPR012312 -
Lsi04g00238 1207 Pfam Hemerythrin HHE cation binding domain 276 408 IPR012312 -
Lsi04g00238 1207 Pfam Hemerythrin HHE cation binding domain 47 175 IPR012312 -
Lsi04g00238 1207 ProSiteProfiles Zinc finger CTCHY-type profile. 1026 1089 IPR017921 -
Lsi04g00238 1207 SUPERFAMILY Zinc hairpin stack 1027 1082 IPR037275 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00238 Lsi-Chr4:2412687 Lsi05g01510 Lsi-Chr5:22884295 3.18E-38 dispersed
Lsi06g01496 Lsi-Chr6:25414014 Lsi04g00238 Lsi-Chr4:2412687 1.91E-16 transposed
Lsi04g00238 Lsi-Chr4:2412687 Lsi06g01320 Lsi-Chr6:23789810 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00238 K16276 - csv:101217252 2193.31