Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00239 ATGGGGACGAGTTCAAAGACGGAAGGACCTTCAACCCCGGCTCTTCGACGAGACCCATATGAGGTATTATCTGTGTCCAGAGATTCTACAGATCAGGAAATTAAGACTGCTTATAGGAAACTCGCGCTCAAGTATCATCCCGATAAAAATGTAGGAAATCCTGAGGCTTCAGAACTGTTCAAGGAGGTTGCTTATTCTTACAACATTTTATCTGATCCAGAGAAGAGAAGGCAGTATGATAGTGCAGGATTTGAGGCTCTTGATGTGGATGGTATGGACATGGAAATTGACTTATCCAATTTGGGCACTGTTAATACCATGTTTGCAGCTTTGTTCAGCAAGTTGGGTGTCCCCATTAAGACTACAATATCAGCCAATGTTCTAGAAGAAGCTCTAAATGGAACTGTGACCATCAGACCTCTTCCTATTGGAACATCAGTCAGTGGGAAGGTAGATAAACAATGTGCTCACTTCTTTGGTGTAACAATCAACGATCAACAGGCTGCAGCAGGCATTGTTGTCAGAGTTACCTCCACTGCTCAAAGCAAACTTAAGCTGCTATACTTTGAGCAAGATGCCAATGGTGGTTATGGTTTAGCCTTACAGGAGGATAGTGAGAAAAATGGCAAGGTTTCATCTGTTGGGATGTATTTTCTACATTTTCAAGTATACAGGATGGATTCAACTGTGAATGCGTTAGCAATGGCCAAGGACCCTGAGGCTGCTTTTTTCAAGAGGTTGGAAGGCCTTCAGCCTTGTGAGGTTTCAGAACTAAAAGCTGGAACACATATATTTGCTGTCTATGGTGATAACTTCTTCAAGTCTGCAACATACACAATTGAGGCAATTTGTGCAAAATCATACGAAGATACGACAGAGAAGCTCAAAGAAATTGAAGCTCAAATTTTAAGAAAGAGAAATGAGTTGCGCCAATTTGAAACTGAATATAGGAAGGCACTTGCACGCTTTCAAGAAGCTACAAACCGATACAGTCAGGAAAAACAATCTGTTGATGAACTTCTAAAAAAGAGAGATAGCATTCACTCTTCTTTCACGGTTTCCAGGCAAGCAAACCATAACGATATTGCCAGTGGTTTAAGTAATGGAAAAGTTGAGGATTCAAAAGTTCACAATTCAGGAGAAGATGGGGGCTCAGATGGAAAGGACAAACCTACCAAGAAGAAATGGTTTAATCTTAATCTCAAAGGGTCAGACAAAAAGCTCGGTTGA 1230 41.14 MGTSSKTEGPSTPALRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNVGNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDVDGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTIRPLPIGTSVSGKVDKQCAHFFGVTINDQQAAAGIVVRVTSTAQSKLKLLYFEQDANGGYGLALQEDSEKNGKVSSVGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKSATYTIEAICAKSYEDTTEKLKEIEAQILRKRNELRQFETEYRKALARFQEATNRYSQEKQSVDELLKKRDSIHSSFTVSRQANHNDIASGLSNGKVEDSKVHNSGEDGGSDGKDKPTKKKWFNLNLKGSDKKLG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2424176 2428553 + Lsi04G002390.1 Lsi04g00239 660288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00239 409 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 407 - -
Lsi04g00239 409 PRINTS DnaJ domain signature 20 38 IPR001623 -
Lsi04g00239 409 PRINTS DnaJ domain signature 38 53 IPR001623 -
Lsi04g00239 409 PRINTS DnaJ domain signature 55 75 IPR001623 -
Lsi04g00239 409 PRINTS DnaJ domain signature 75 94 IPR001623 -
Lsi04g00239 409 CDD DnaJ 18 72 IPR001623 -
Lsi04g00239 409 SMART dnaj_3 17 75 IPR001623 -
Lsi04g00239 409 MobiDBLite consensus disorder prediction 358 409 - -
Lsi04g00239 409 Gene3D DnaJ domain 4 96 IPR036869 -
Lsi04g00239 409 Coils Coil 288 343 - -
Lsi04g00239 409 SUPERFAMILY Chaperone J-domain 17 93 IPR036869 -
Lsi04g00239 409 Pfam DnaJ domain 18 80 IPR001623 -
Lsi04g00239 409 MobiDBLite consensus disorder prediction 1 26 - -
Lsi04g00239 409 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Lsi04g00239 409 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Lsi04g00239 409 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 4 407 - -
Lsi04g00239 409 MobiDBLite consensus disorder prediction 374 409 - -
Lsi04g00239 409 MobiDBLite consensus disorder prediction 358 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00239 - - - csv:101217482 783.097
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00239 Lsi09g00617 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00239 Lsi-Chr4:2424176 Lsi02g02460 Lsi-Chr2:31107202 5.96E-17 dispersed
Lsi02g01754 Lsi-Chr2:23261399 Lsi04g00239 Lsi-Chr4:2424176 1.89E-109 transposed
Lsi06g01418 Lsi-Chr6:24733723 Lsi04g00239 Lsi-Chr4:2424176 2.53E-10 transposed
Lsi07g00828 Lsi-Chr7:9201729 Lsi04g00239 Lsi-Chr4:2424176 3.56E-09 transposed
Lsi10g01397 Lsi-Chr10:18091541 Lsi04g00239 Lsi-Chr4:2424176 1.31E-14 transposed
Lsi03g01707 Lsi-Chr3:28452276 Lsi04g00239 Lsi-Chr4:2424176 1.06E-13 transposed
Lsi04g00239 Lsi-Chr4:2424176 Lsi09g00617 Lsi-Chr9:6787713 5.61E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g332 Blo01g00506 . Bda01g02065 . . . Bma14g01905 . Cmo04g01569 Cmo18g01016 . Cma18g01005 Car04g01551 Car18g00927 Sed06g1905 Cpe09g00315 Cpe01g01335 Bhi07g01301 Tan04g0834 Cmetu09g0646 Lac13g0518 Hepe01g1173 . . Cla05g02283 Cam05g2455 Cec05g2477 Cco05g2520 Clacu05g2451 Cmu05g2312 Cre05g2430 Cone13ag0815 Cone19ag0822 Cone6ag0433 Cone9ag0450 Lsi04g00239 Csa05g02067 Chy10g01164 Cme10g00241 . . Bda07g01722 . . Bpe02g02257 Bma01g00180 . . Cmo04g02170 Cmo15g00961 Cma04g02074 Cma15g00922 Car04g02012 Car15g00864 Cpe13g00398 . Bhi12g00831 . . . . . Lcy10g1477 Cla01g00569 Cam01g0595 Cec01g0584 Cco01g0610 Clacu01g0588 Cmu01g0560 Cre09g1949 Lsi09g00617 . Chy09g00895 Cme09g00772
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001619 2 4 2 1 1 2 3 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 1 2 2 3 5 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00239 Lsi_Chr04 FPKM 14.058771 14.684258 18.119669 17.372078 28.607222 26.546062 29.636473 21.76469 20.043598 21.801981