Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00242 ATGGTTTGTGCCGATTCCGAACAAACACCACTAAACTCCATGGCGATGGGACTCGAGAGATCAAAGCCGCTCCACAATTTCACCCTCCCCTTCTTGAGGTGGGGAAATCAGAGGTATCTCCGCTGTATGAAATTAGACTCCGAGGCCGACGCCGACGACGACCTTCCTCCTCCTCTCGATCGCCGCTCTTCTCCCTCCCGCCGGTGGAACTGCCGGAAGTTTCACACGGACAGGCCGACATCCGCCAAGAGACTTAGGGCTTCTAAGTCCAAGATCGATGGCGATGAAGATATAGCGGCGGTGCGAGAGAAACTCATGATTGATCTAAAAACGGCTGCCGATAGAATGAAGGTTGCATTCTGGAGGGATGGAGTGGTCGACGATGACGAGGATGACGACGATATGACCACCTCGGAGAAAAAAATTCCGGCGGCGCCGGCGGCGTCGTCGGTGCCGGCGGCGTCACCGGAGAAGGAGTTAAGACCGTGGAGTTTGAGGGTGAGGAAAGCGGCGACGAAGGCTCCGATTGATACAATTCCCGAAGGTAAAGGCGGTGGTGGTAAAGTGTTGAAGATCGAGAAGAGGTCGGAGAAAAAGGCGATTCGTAATTCGCCGTTGAGAAGCGGTGACGGCGGCGGTAGCGTGAAGTCCTTAGGGCGGCGATTGGTAACGGAGAAGAAGGAAAGGGAGAAATTCTCGGTATCACTTTCCAAAAAGGAGATCGAAGAGGATTTCATGGCTATGATTGAACACGCTTTTCCCCGGATTATGGTTGACGGAGATCACCACCGATCTCTACGAGGTGCCGGAAATCAAAGAAAACGGAAAGTCTGGCACTCTCCGATTCCCATTCTCAACAAATCCGTCGACGACAGCACAGGAAACCGCGCGATGTTGCAGGCTTCCATTATTCCAATTCAATCGCCGCCTCCGATGTTCCATAACAAAACTACAGGACTCCCAATTCCTCCATCAGTTGTCTTCCCCATCCGCCGGCCGTCGACATCGTTACGCCTACGATCACCCCCAGTAACGAGAAGCTCTATCTCTTCTTCGTTTGATCTCAACGCCGGCAAAGGGATGGATGGTTTCCTAGATATTGAACTCAAAGTTCGTGATTATGAGCTGGATCAATTCGGTGTTGTGAACAATGCTGTTTATGCAAGTTATTGCCAACATGGTCGTCATGAACTGCTGGAAAGTATAGGCCTGAGTCCTGACGCCGTTGCTCGTGATGGAGATGCATTAGCTTTATCAGAATTGTCTTTGAAGTTCCTTGCACCACTTAGAACTGGAGACAAATTTGTTGTTAAGGTGAGGATCTCAGGCACATCAGCTGCTCGCTTCTACATTGATCATTTCATTTTCAAGCTACCAAATATGGAGCCAATCTTAGAGGCAAAGGGTACGGCAGTTTGGCTTAATAAAAGTTATCGCCCGAGTTACAAGATGGATGGGTTCCAAGAATTTGAGCTAAAAGTTCGTGATTATGAGTTGGATCAGTTCGGTGTGGTCAACAATGCTGTTTATGCAGATTATTGCTACCATGGTCGTCACGAACTGCTTGAAAGGATGGGAGTGAGTCGTGATACAATTACTGGGAGAGGGGATTCCTTAGCGCTATCAGAGTTGTCTTTGAATTTCCTTGCACCACTTAGAAGTGGAGACAGATTTGTTCTTAAGGTCAGGGTGTCGGGAATCTCAAGAGCTCGCATCTACATTCAGCACTTAATTTTCAAGCTTCCAAATATGGAGGCAATCTTAGAGGCAAAGGCTACTGCAGTTTGGGTTAATAAAAACAATCGTCCAGTGCGAATTCCAGAAGAGTATTTAGCCAAATTTGCTGAATTTGTTGGGGATCGGCATCACTTCAAAAAAGAACAAGAAATATGA 1893 48.44 MVCADSEQTPLNSMAMGLERSKPLHNFTLPFLRWGNQRYLRCMKLDSEADADDDLPPPLDRRSSPSRRWNCRKFHTDRPTSAKRLRASKSKIDGDEDIAAVREKLMIDLKTAADRMKVAFWRDGVVDDDEDDDDMTTSEKKIPAAPAASSVPAASPEKELRPWSLRVRKAATKAPIDTIPEGKGGGGKVLKIEKRSEKKAIRNSPLRSGDGGGSVKSLGRRLVTEKKEREKFSVSLSKKEIEEDFMAMIEHAFPRIMVDGDHHRSLRGAGNQRKRKVWHSPIPILNKSVDDSTGNRAMLQASIIPIQSPPPMFHNKTTGLPIPPSVVFPIRRPSTSLRLRSPPVTRSSISSSFDLNAGKGMDGFLDIELKVRDYELDQFGVVNNAVYASYCQHGRHELLESIGLSPDAVARDGDALALSELSLKFLAPLRTGDKFVVKVRISGTSAARFYIDHFIFKLPNMEPILEAKGTAVWLNKSYRPSYKMDGFQEFELKVRDYELDQFGVVNNAVYADYCYHGRHELLERMGVSRDTITGRGDSLALSELSLNFLAPLRSGDRFVLKVRVSGISRARIYIQHLIFKLPNMEAILEAKATAVWVNKNNRPVRIPEEYLAKFAEFVGDRHHFKKEQEI 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2467457 2475202 + Lsi04G002420.1 Lsi04g00242 660291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00242 630 CDD 4HBT 367 475 - -
Lsi04g00242 630 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 329 480 - -
Lsi04g00242 630 Gene3D Hotdog Thioesterase 355 480 - -
Lsi04g00242 630 Gene3D Hotdog Thioesterase 481 619 - -
Lsi04g00242 630 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 329 480 - -
Lsi04g00242 630 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 485 618 - -
Lsi04g00242 630 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 485 618 - -
Lsi04g00242 630 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 361 480 IPR029069 -
Lsi04g00242 630 MobiDBLite consensus disorder prediction 50 72 - -
Lsi04g00242 630 Pfam Thioesterase superfamily 502 585 IPR006683 -
Lsi04g00242 630 Pfam Thioesterase superfamily 379 462 IPR006683 -
Lsi04g00242 630 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 484 619 IPR029069 -
Lsi04g00242 630 CDD 4HBT 489 598 - -
Lsi04g00242 630 MobiDBLite consensus disorder prediction 127 159 - -
Lsi04g00242 630 MobiDBLite consensus disorder prediction 197 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00242 - - - csv:101211482 370.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00242 Lsi-Chr4:2467457 Lsi08g00381 Lsi-Chr8:10509652 1.13E-30 dispersed
Lsi04g00242 Lsi-Chr4:2467457 Lsi06g01321 Lsi-Chr6:23803475 3.43E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g325 . . . . . . . . . Cmo18g01019 . Cma18g01010 . Car18g00931 . Cpe09g00313 . Bhi07g01306 . . Lac13g0512 Hepe01g1177 . . Cla05g02287 Cam05g2460 Cec05g2480 . Clacu05g2455 Cmu05g2316 Cre05g2434 Cone13ag0822 Cone19ag0828 . . Lsi04g00242 . . Cme10g00245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002243 1 4 1 1 1 2 4 1 1 1 2 2 2 3 2 2 2 1 3 2 1 2 3 5 5 1 2 2 1 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00242 Lsi_Chr04 FPKM 89.527054 101.480576 84.666229 80.202187 116.41748 116.594124 108.841797 94.17157 102.137512 95.462074