Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00249 GATCAACTTGTCTGCCCTAAACCACGCCGTTTCACCAATAATCTCAACGTCGCCGTCAACGGCCACGCCGACAGCTCCCTCCGGTGGAATCGAAGTCATCAAGTTGAACAAATTGACCTGGCAGCCGGACCGGATCTGCTGGACTTCCTCCTGACAAAGTTTCTTCCGATCATTAAATTAATATCGGAGTTTATACTGTATAGCTTCCTTTTGGTTAACGATCGTGTGGATGGTTGCAGCGTGGACCAATCGTTTACGCAGTTGGCTTCGTCGCCCCCGTTTTTATGTGGGTCTCCGCCGAGCAGAGTAGCCAACCCATTGATTCAGGACGCTCGATTTAGGGATGAAAAATTCATCCCCTTTGCTCCGATTGCTTCACCGTCAGGTCAGTTGTCGCCCTCTACATCCTCTAGGAAAGGAGGCCGTGTAAGGGCGAGTTTTGGGAACAAACCAACGGTGAGGATTGAGGGTTTTGATTGCCTTGACAGGGATAGGCAAAATTGCAGCATCCCTGCTTTCGCC 522 50.57 DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPPSRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2544868 2545514 + Lsi04G002490.1 Lsi04g00249 660298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00249 174 PANTHER BNAA07G24630D PROTEIN 2 53 - -
Lsi04g00249 174 PANTHER EXPRESSED PROTEIN 69 174 - -
Lsi04g00249 174 PANTHER EXPRESSED PROTEIN 2 53 - -
Lsi04g00249 174 PANTHER BNAA07G24630D PROTEIN 69 174 - -
Lsi04g00249 174 MobiDBLite consensus disorder prediction 127 142 - -
Lsi04g00249 174 MobiDBLite consensus disorder prediction 124 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00249 - - - csv:101219538 255.758
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00249 Lsi-Chr4:2544868 Lsi05g00381 Lsi-Chr5:4804229 3.09E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g313 . Blo16g01065 Bda01g02074 . . . . . Cmo04g01574 Cmo18g01026 . Cma18g01017 Car04g01556 . Sed06g1893 . Cpe01g01340 Bhi07g01319 Tan04g0846 Cmetu09g1146 Lac13g0503 Hepe01g1186 . . Cla05g02294 Cam05g2467 Cec05g2488 Cco05g2531 Clacu05g2462 Cmu05g2323 Cre05g2441 . . . . Lsi04g00249 Csa05g02618 Chy10g01153 Cme10g00253 . . . . . Bpe02g02265 Bma01g00170 Bma06g00756 . . Cmo15g01033 . . . Car15g00928 . Cpe04g01406 Bhi12g01345 . . . . . Lcy10g0939 . . . . . . . . Csa05g01493 Chy09g00599 Cme09g00799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004730 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 2 1 1 1 1 1 5 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00249 Lsi_Chr04 FPKM 14.941585 17.710365 9.649426 10.868978 4.988055 5.830228 4.94512 25.100468 23.336273 24.672192