Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00252 ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGAGTCTCAAGCCAACGCCACCATTTTTCTCGCCAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATTACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAGCGGATCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCTAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTTTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGAAGCCGGTTCAAGAAGCCCGACCATCGAACCAAACCAAAACCCGGACCGGTTCCTGATTTAAGAATCGGACCTAGTTTTGAAGAAGCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA 615 53.82 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSAESQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLSGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPGPVPDLRIGPSFEEAGRVLRNGSRFEKGDVELELTLKSAQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2584790 2586420 + Lsi04G002520.1 Lsi04g00252 660301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00252 204 MobiDBLite consensus disorder prediction 151 173 - -
Lsi04g00252 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 165 - -
Lsi04g00252 204 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Lsi04g00252 204 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Lsi04g00252 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00252 Lsi-Chr4:2584790 Lsi05g00382 Lsi-Chr5:4824488 3.85E-67 dispersed
Lsi04g00252 Lsi-Chr4:2584790 Lsi06g01333 Lsi-Chr6:23917405 7.48E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25114 PF03195 LOB 5.10E-23 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00252 - - csv:101212446 384.03