Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00252 | ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGAGTCTCAAGCCAACGCCACCATTTTTCTCGCCAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATTACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAGCGGATCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCTAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTTTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGAAGCCGGTTCAAGAAGCCCGACCATCGAACCAAACCAAAACCCGGACCGGTTCCTGATTTAAGAATCGGACCTAGTTTTGAAGAAGCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA | 615 | 53.82 | MRMSCNGCRILRKGCSDDCIIRPCLQWIPSAESQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLSGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPGPVPDLRIGPSFEEAGRVLRNGSRFEKGDVELELTLKSAQ | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2584790 | 2586420 | + | Lsi04G002520.1 | Lsi04g00252 | 660301 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00252 | 204 | MobiDBLite | consensus disorder prediction | 151 | 173 | - | - | |
Lsi04g00252 | 204 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 165 | - | - | |
Lsi04g00252 | 204 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Lsi04g00252 | 204 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - | |
Lsi04g00252 | 204 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 41-LIKE | 1 | 165 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00252 | Lsi-Chr4:2584790 | Lsi05g00382 | Lsi-Chr5:4824488 | 3.85E-67 | dispersed | |
Lsi04g00252 | Lsi-Chr4:2584790 | Lsi06g01333 | Lsi-Chr6:23917405 | 7.48E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25114 | PF03195 | LOB | 5.10E-23 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00252 | - | - | csv:101212446 | 384.03 |