Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00253 ATGACGACGAGGAAAAGTGTGGAGAAAACAGTAGAGGGAGGCAAGACCGCCAGAGCCTGTGATAGCTGTATCAGCAAGCGGGCTCGGTGGTACTGTGCTGCCGATGATGCTTTTCTGTGCCAAGCTTGTGATGCTTCGGTCCACTCCGCCAACTCCTTGGCTCGTAGGCATGAGCGAGTTCGTCTTCAAACTGCCTCTTTCAGACCCTCTTCAGACAACTCCTCTGCTGCCTCATGGCACCAGGGCTTCGCCAAAAAGCCACGGTCGCCTCGAATGGGAAAGACTGCTCCGGCTAGGAAGCCATTTCCTCAGGTACCGGAGGTGAGTGCTAAAGAAGAAACTGAAGATCAAGAACAGCTTCACCTTCATAGAGTTCCTGTATTGGGAGCCGATTCAAAAGATGGTAATTTGGCTAGTTTTGTTGGGGAAAAAGAGAGCTCAAATGAGTATCTGTCGTACGATATGGATCCTGCTGAATTTGCAGCTGATGTTGAGAGTTTGTTGGGAAACACGCTTGATAATGAGTGCTTTGATATGGAAGAACTGGGGCTGGCGGCTTCCAAAGACCACTCAATGACAAACGATGATTATTCTTTAAACAGCCGCGAACTTATTAAGAGTGAACCAGATGAGATAGAGGAATTAACTCCGATGCTCGGCACTGAAACCGATACAATGAGGGAGCCATTTGAGCTGAACTTTATGGACTTTGGCTGCAATACGACAACGTGCAGTGAGGAAGACAAGGTGATGATGGAAGTCATGGCAGTGGTGAAGAACGGTGAACTTGAGATGGAAGAGACGAAGATTGTTAAAAACAAAAAGAAAATATCATTGAGTTTGGATAGTGAAGCAGTGATTATAGCTTGGGGGAGCAGAGGAACTCCATGGACATCCGGTGACCGACCAAATCTCGACCTCGATTATTACTGGCCGAACTACATGGGTACGTGTGAGAGTGAATATTATTATCAATCTTACGGGGAGTTTGGCGGCAGAATTGGCCGACAAGCAGTGGCTGGAGTCGAAGGAGAGAGAGAAGCACGAGTATCGAGATACAGAGAGAAGAGAAGGACGAGATTATTCGTAAAGAAAATAAGATATGAAGTTCGGAAATTGAATGCAGAGAAGAGACCGAGAATGAAAGGGAGGTTTGTGAAGAGATCATCTTGCTTTGCGCCTCCACCTTTGCCTTTGTTTAATTAA 1206 46.68 MTTRKSVEKTVEGGKTARACDSCISKRARWYCAADDAFLCQACDASVHSANSLARRHERVRLQTASFRPSSDNSSAASWHQGFAKKPRSPRMGKTAPARKPFPQVPEVSAKEETEDQEQLHLHRVPVLGADSKDGNLASFVGEKESSNEYLSYDMDPAEFAADVESLLGNTLDNECFDMEELGLAASKDHSMTNDDYSLNSRELIKSEPDEIEELTPMLGTETDTMREPFELNFMDFGCNTTTCSEEDKVMMEVMAVVKNGELEMEETKIVKNKKKISLSLDSEAVIIAWGSRGTPWTSGDRPNLDLDYYWPNYMGTCESEYYYQSYGEFGGRIGRQAVAGVEGEREARVSRYREKRRTRLFVKKIRYEVRKLNAEKRPRMKGRFVKRSSCFAPPPLPLFN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2588357 2589852 - Lsi04G002530.1 Lsi04g00253 660302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00253 401 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515
Lsi04g00253 401 Pfam CCT motif 346 388 IPR010402 GO:0005515
Lsi04g00253 401 CDD Bbox1_BBX-like 19 62 - -
Lsi04g00253 401 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Lsi04g00253 401 MobiDBLite consensus disorder prediction 65 80 - -
Lsi04g00253 401 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 394 - -
Lsi04g00253 401 SMART bboxneu5 15 62 IPR000315 GO:0008270
Lsi04g00253 401 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Lsi04g00253 401 MobiDBLite consensus disorder prediction 65 103 - -
Lsi04g00253 401 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00253 - - - csv:101212689 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00253 Lsi-Chr4:2588357 Lsi11g00792 Lsi-Chr11:9260257 1.79E-17 dispersed
Lsi02g01240 Lsi-Chr2:16311843 Lsi04g00253 Lsi-Chr4:2588357 4.22E-20 transposed
Lsi08g00409 Lsi-Chr8:11402607 Lsi04g00253 Lsi-Chr4:2588357 8.19E-106 transposed
Lsi04g00253 Lsi-Chr4:2588357 Lsi06g01334 Lsi-Chr6:23924986 2.54E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g308 . . . . . Bpe10g00936 Bma14g01712 Bma15g00088 Cmo04g01578 Cmo18g01030 . Cma18g01020 Car04g01559 . Sed08g0353 Cpe09g00303 Cpe01g01788 Bhi07g01322 Tan04g0850 Cmetu03g1640 Lac13g0498 Hepe01g1190 . . Cla05g02298 . . Cco05g2536 . . . . . Cone13ag0287 Cone19ag0279 Lsi04g00253 Csa05g02613 Chy10g01148 Cme10g00258 Blo06g00962 Blo11g00848 Bda07g01539 . Bpe11g01703 . . Bma06g01024 . Cmo04g02148 . Cma04g02049 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002023 2 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 2 2 2 2 2 1 2 1 2 2 4 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25115 PF00643 zf-B_box 2.00E-07 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00253 Lsi_Chr04 FPKM 0.787929 1.133225 0.279684 0.412527 1.86349 1.278552 1.676542 0.047103 0.159674 0.0