Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00254 | ATGGGGATGAAGAAGGCGACCACATTGTTGGATGATCTGCTACAGAACGCTGGAGGTTGTGCGGTGATTGATGGAGGTTTCGCCACGCAGCTTGAGAAACACGGCGCTGTCATTAACGATTCACTATGGAGTGCTGTTTGCCTCATTAATGATCCTGACCTAATCAAGAAGGTCCTCTCTTACAGTTGTTTTTTCCACCTTTGTTTCGGTGCATCACGTTCTCATTCTCATCGGTGTTTATTGATCGGCTTAAATGTGCAGGTCCATTTGGAGTACTTGGAGGCTGGAGCAGATATTTTGGTTTCTTCATCTTACCAGGCCACCATTCCTGGGTTTATATCAAAGGGGCTGTCCGTGGAAGAAGGGGAGTTGCTCTTAGAAAAGAGTGTTAAATTGGCCACCGAAGCTCGTGATAGTTTCTGGGATTCTGTGAGGAGTATCCCAGGGCATAAGTACAATAGGGCTTTGGTTGCAGCATCCATTGGAAGCTATGGTGCCTATCTTGCTGATGGCTCAGAGTATAGTGGGCATTATGGGCCAGATGTGAATGTGGATAAGCTGAAGGATTTTCATCGACGCAGATTGCAGATTCTTGTTGATGCAAGCCCAGATTTGCTTGCATTTGAGACTATTCCCAATAAACTTGAAGCCCAGGCCTGTGTGGAGTTGCTTGAAGAAGAAAACATCCCAATTCCATCTTGGATCTGCTTTAGCTCCGTAGATGGTGAGAATGCACCATCTGGAGAGAGCTTCGAGAAGTGCCTCCATGCGATTAATAAAAGTGACAAAGTAAATGCGGTTGGTATAAACTGTACACCTCCTCACTTTATTGAAGCTCTGATTACAAAGTTCAAAGAGGTAGGAACTAAATCTCTTATTGTTGATTTGATATTGTTTTCTTGTTCAATGGTTTTGAAACCGAAATATTCACTACAGTTAACAAACAAGCACATTGTTGTCTATCCCAATAGTGGCGAGGTATGGGATGGCAGATCCAAGAAATGGCTGGTGAGTCGACTTATTCTTTCCTCCCCCACTCTGATATTTCATGGCTTGTGGGCCTACATCTGTTCTGGTTTTGGTAGCCATCAAATTGTTTTGGTGATGACAAATTTGAATCATTTAGTTCAAGATGGCACGATTTGGGAGCAACATTCATTGGAGGCTGTTGTCGTACGACACCATCTACCATCCGTTCTATATCGAAGTTGGATGGGATTGGGGACTGAACGGAAAGATTATACTAAAGCGAGAGGCAAG | 1260 | 43.97 | MGMKKATTLLDDLLQNAGGCAVIDGGFATQLEKHGAVINDSLWSAVCLINDPDLIKKVLSYSCFFHLCFGASRSHSHRCLLIGLNVQVHLEYLEAGADILVSSSYQATIPGFISKGLSVEEGELLLEKSVKLATEARDSFWDSVRSIPGHKYNRALVAASIGSYGAYLADGSEYSGHYGPDVNVDKLKDFHRRRLQILVDASPDLLAFETIPNKLEAQACVELLEEENIPIPSWICFSSVDGENAPSGESFEKCLHAINKSDKVNAVGINCTPPHFIEALITKFKEVGTKSLIVDLILFSCSMVLKPKYSLQLTNKHIVVYPNSGEVWDGRSKKWLVSRLILSSPTLIFHGLWAYICSGFGSHQIVLVMTNLNHLVQDGTIWEQHSLEAVVVRHHLPSVLYRSWMGLGTERKDYTKARGK | 420 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2591011 | 2594400 | - | Lsi04G002540.1 | Lsi04g00254 | 660303 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00254 | 420 | ProSiteProfiles | Homocysteine-binding domain profile. | 9 | 372 | IPR003726 | - | |
| Lsi04g00254 | 420 | SUPERFAMILY | Homocysteine S-methyltransferase | 87 | 336 | IPR036589 | - | |
| Lsi04g00254 | 420 | PANTHER | ZGC:172121 | 87 | 340 | - | - | |
| Lsi04g00254 | 420 | SUPERFAMILY | Homocysteine S-methyltransferase | 17 | 58 | IPR036589 | - | |
| Lsi04g00254 | 420 | PANTHER | HOMOCYSTEINE S-METHYLTRANSFERASE 1 | 87 | 340 | - | - | |
| Lsi04g00254 | 420 | PANTHER | HOMOCYSTEINE S-METHYLTRANSFERASE 1 | 1 | 59 | - | - | |
| Lsi04g00254 | 420 | Pfam | Homocysteine S-methyltransferase | 22 | 336 | IPR003726 | - | |
| Lsi04g00254 | 420 | Gene3D | - | 9 | 347 | IPR036589 | - | |
| Lsi04g00254 | 420 | PANTHER | ZGC:172121 | 1 | 59 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00254 | K00547 | mmuM, BHMT2; homocysteine S-methyltransferase [EC:2.1.1.10] | - | csv:101218830 | 509.99 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00254 | Lsi-Chr4:2591011 | Lsi09g01304 | Lsi-Chr9:20893883 | 9.79E-98 | dispersed | |
| Lsi04g00254 | Lsi-Chr4:2591011 | Lsi02g02266 | Lsi-Chr2:29246055 | 1.38E-88 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g306 | . | . | . | . | . | . | Bma14g01711 | . | Cmo04g01579 | Cmo18g01031 | . | Cma18g01021 | Car04g01560 | Car18g00940 | Sed06g1889 | Cpe09g00302 | Cpe01g01343 | Bhi07g01323 | Tan04g0851 | Cmetu10g0078 | Lac13g0497 | Hepe01g1191 | . | . | Cla05g02299 | Cam05g2472 | Cec05g2494 | Cco05g2537 | Clacu05g2467 | Cmu05g2329 | Cre05g2446 | Cone13ag0830 | Cone19ag0835 | . | . | Lsi04g00254 | Csa05g02612 | Chy10g01147 | Cme10g00260 | . | Blo11g00847 | Bda07g01538 | . | Bpe11g01702 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000691 | 3 | 4 | 3 | 2 | 3 | 1 | 3 | 2 | 1 | 3 | 3 | 1 | 5 | 3 | 3 | 4 | 2 | 4 | 4 | 1 | 3 | 3 | 3 | 3 | 3 | 2 | 2 | 7 | 14 | 3 | 98 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lsi04g00254 | Lsi_Chr04 | FPKM | 1.869071 | 2.273069 | 0.746218 | 0.729137 | 2.027047 | 1.853199 | 1.65671 | 0.0 | 0.0 | 0.191165 |