Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00266 ATGGCAATATTTCTTGCGACGCCAATGGCTAACGATACTGCTCACCGGAAGCACCGCCGATCTGCTTCCGATGAAGACGATGAGAAATATTCGAAGCGTCACAAACACCGTCACCATCGCCGCCGTCACCGACATCGTCACAGCAGCAATAAGAACGAAGAAGAAAGCTGCCGTGACCAGGAGGATAGTGTTCCTCCTGTTGCTAATCGTAGATCTCGGCCCGAAGATGACGTTGAGGAAGGTGAAATTCTCGAAGAGGACGAGGCTGGCGTTCGCGAGAACGAGAGCGCGATGAAGGAGGTGGATGTGAAATTTGGGAAATTTGAAGCTGATGAAATTTCCCATAGAATTGACCAGCCCGATATGCGTTTGAAAATCAATTGTACCTTCAAGGGTTCTATTCTCTTAGAGAAACGAACGAAGACTTTTTTAACTGTCTTTAAACAACGAACAATGACCTTTTACGGGTATATATGTACTTTCCTTCGTTCGCGTCAGTTGCCAATTGAGAATTATTTTCTTGAGTGTCATTCGGTGGATGAATCATCTGATATCGAGGCTAATTTAATTGTGAAAGAGGGGGCAGGAAACAGTGCTCAAGATCGGAAGACCTCAAAAGTGGACAGTAAGTTCTATAATTATAAGGAAAAAGGTGGCTATCATCTAAAAAAAGACAGAGACAAGGAAAACATGATGCTCTATCAAACTGACTCTGGCTGTAAGCATGGCAATGATGGTAGCTTTTCCACGAGTGAAGTTGCTGGAATTAAATACAATAATTTTGAACGTTGTCGAGAGGGTCATAGCAAAGGGGATTTTGATCTCGAATCTCTGGAGTTAGACGAGAGGCAGCACAAACAAATGTTATCTCCTTCTAAAGGGGGTATTAAGAAAATAAGCAACAATGGCAATGGAAAGGTGGCAACAGATGGAAGCACCTTGGGGAATGGGAAAAGGCCACAGTTAGAAAGGACTGAAGACAAGTCTCAGGATTTTACGCCATCAACATCTCACGATCGATTCATTGATTCATCAGATTGTAGGAGCAGATCGAGGTCAAATTGTCATTCTAGGGGGCAATCTCAGTCTCGTGAAACAGTAGAAGAGGAGGCAGAGTCAAAGAGTAGACATTATCATGGTTGGGATCACCGAGTATTTGATGATAAAGGTAAAGTTCACACTGACTTGGATGATGATTACACTGAATGTGCTAGGGGAGAGGGAAGGCGGCATCGAAGCAGGGATACGAAGGACAAAGGGAGAATAAAGATGGAGGTGGATGGGGACTGGTCCAAGGAAAACGAAATGGAAAAAAACAAAGATAAAGATAAGGGGATAGATAAGCAAAAGTATGATGAGAGAGAGAGAGGTAGGAGTAAGGATAGAAGAAAGGAAATGGAACGAAACAGGAGCAGGGAAAGAGAGACAGATAGGGATAGGAGGAGGGAAAGGGATGCGGAAAGAGATAGGAGAGTGAAGGAAAGAGGTTGGAGTAGGGAAAGAGAGGTGCAGAGAGATAGAAGAGTGGAGAGGGAAAGAGGTTGGAGTAGGGAAAGAGAGGTAGAAAGGGATAGAAGAATGGAGAAGGAGAGAGGTTGGAGCAAGGAAAGAGAGGTGGACAGGGATAGAAGAGCAGAAAAGGAAAGATGTAGGAGCACTGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAAGATAGGAGCAAGGAAAAAGAAGTGGATTGGGATGGTAGAAGGGATAGGGACAGGGATCGGAATGATGATAAGGCTGAATATAGTGATAGAAATAGAGACAGGGAAAGGGTGAGAGAGATGCAAAAGGACCGGTATAGGGATAAAGAATTTGATAGGGAGAGACAAGATGGTAGAAACAAGAATAAATCCAGTGACATTTTAAGTAGTAAGGACAAGTATGGGAATCTTGAACATGGCTATGTTAAAGGTTCTAAGCAGTCTAGGCATTATGTTAATGAATTTGGTCTGGATGGGGGAAGAATTAATACTGTGGAAAAGCGTGGTAGTTTTAAGAGAAATACTCGTGAAGGAGGTGAAGACAAGCTATTGAGCCAGTATGAAGTCTATCTGCTTACAATGGCCCGACTTCTCTTTCTGTGTAGTGATCATGATGAGGAGGAAGAGGATGGAGACAGCATGTCATTTCAATTAGCCGATGAAGAAGAGGAGGATCTTAACAGAATCAAGGAGGAGAGTAGAAGACGGAGGCAAGCAATCTTAGAAAAATACAAATGCCAGCAGTTAGAGAAACAAGTAGAGCCTTCTTTGAAGGAATCTGAGAAAGGTAAGGATTCTGCAAATGATTCTTCTCAATCAGAAGCTGCTGCTCGTGCTATTCCAGAATTGGTTGATGGGGCGGTGGATGATAGTGTTGCTGACTCATCTTTTGTTGTGGAGAAATCACCACAACAAAATGGAGTAATTGCGACTGATAAAACTGCTGGTACTAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGATGGATTATTCTGTGATGACATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGCAAAGGTGATGGTTTGCAGATAGAGAGGAGTGGTCTTCATGACAATTGGGATGATGCGGATGGATATTATAGTAAGTATACGGACTATCGATTTGGTGAAGTGCTTGATAGTCGGTATGAAATTGCTGCTGCACATGGCAAAGGTGTCTTTTCAACCGTAGTCCGTGCAAAGGATCTCAAAGCTGGTCATGGCGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGCAATGAAACAATGTACAAGGCTGGTCTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAACTGTGGTGTTCTCCACTGTGATATAAAGCCGGATAATATGCTGGTTAACGAGGGAAAAAATGTGCTGAAGCTTTGTGATTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAATCACTCCATACCTTGTTAGCCGGTTTTATCGTGCACCTGAAATAATTTTAGGGCTGTCATATGACCATCCAATGGATATCTGGTCTGTGGGTTGCTGTTTGTACGAGCTATCTACAGGAAAAGTTCTTTTCCCAGGTCCTTCTAATAATGACATGCTGCGGCTACACATGGAATTAAAGGGCCCTTTTCCAAAGAAGATGCTTCGTAAGGGAGCATTTACTGACCAACATTTTGACCAGGACCTGAACTTCCATGCTTCTGAGGAGGATCCTGTAACGAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGATCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTAGACAAAATTTTTGTGTTGGATCCAGAAAAACGGATGACAGTATCACAAGCATTGAATCATCCATTCATCACTGTCTTCTTTATGATGACCTAA 3654 42.5 MAIFLATPMANDTAHRKHRRSASDEDDEKYSKRHKHRHHRRRHRHRHSSNKNEEESCRDQEDSVPPVANRRSRPEDDVEEGEILEEDEAGVRENESAMKEVDVKFGKFEADEISHRIDQPDMRLKINCTFKGSILLEKRTKTFLTVFKQRTMTFYGYICTFLRSRQLPIENYFLECHSVDESSDIEANLIVKEGAGNSAQDRKTSKVDSKFYNYKEKGGYHLKKDRDKENMMLYQTDSGCKHGNDGSFSTSEVAGIKYNNFERCREGHSKGDFDLESLELDERQHKQMLSPSKGGIKKISNNGNGKVATDGSTLGNGKRPQLERTEDKSQDFTPSTSHDRFIDSSDCRSRSRSNCHSRGQSQSRETVEEEAESKSRHYHGWDHRVFDDKGKVHTDLDDDYTECARGEGRRHRSRDTKDKGRIKMEVDGDWSKENEMEKNKDKDKGIDKQKYDERERGRSKDRRKEMERNRSRERETDRDRRRERDAERDRRVKERGWSREREVQRDRRVERERGWSREREVERDRRMEKERGWSKEREVDRDRRAEKERCRSTDREGNRDRRREREKDRSKEKEVDWDGRRDRDRDRNDDKAEYSDRNRDRERVREMQKDRYRDKEFDRERQDGRNKNKSSDILSSKDKYGNLEHGYVKGSKQSRHYVNEFGLDGGRINTVEKRGSFKRNTREGGEDKLLSQYEVYLLTMARLLFLCSDHDEEEEDGDSMSFQLADEEEEDLNRIKEESRRRRQAILEKYKCQQLEKQVEPSLKESEKGKDSANDSSQSEAAARAIPELVDGAVDDSVADSSFVVEKSPQQNGVIATDKTAGTKGLGEGTPKAEGSDGLFCDDIFGETPAAVRKMGKGDGLQIERSGLHDNWDDADGYYSKYTDYRFGEVLDSRYEIAAAHGKGVFSTVVRAKDLKAGHGEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLSYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITVFFMMT 1217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2738810 2750231 + Lsi04G002660.1 Lsi04g00266 660315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 362 651 - -
Lsi04g00266 1217 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 534 1211 - -
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 714 737 - -
Lsi04g00266 1217 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1022 1034 IPR008271 GO:0004672|GO:0006468
Lsi04g00266 1217 SUPERFAMILY Protein kinase-like (PK-like) 882 1211 IPR011009 -
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 757 774 - -
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 320 334 - -
Lsi04g00266 1217 Gene3D Phosphorylase Kinase; domain 1 861 954 - -
Lsi04g00266 1217 CDD STKc_PRP4 894 1210 IPR044092 GO:0004674|GO:0006468|GO:0045292
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 757 782 - -
Lsi04g00266 1217 Pfam Protein kinase domain 900 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00266 1217 SMART serkin_6 895 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 1 96 - -
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 12 32 - -
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 33 47 - -
Lsi04g00266 1217 Coils Coil 725 745 - -
Lsi04g00266 1217 Gene3D Transferase(Phosphotransferase) domain 1 955 1211 - -
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 287 653 - -
Lsi04g00266 1217 PANTHER DUAL SPECIFICITY PROTEIN KINASE 534 1211 - -
Lsi04g00266 1217 ProSiteProfiles Protein kinase domain profile. 895 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 294 319 - -
Lsi04g00266 1217 MobiDBLite consensus disorder prediction 48 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00266 K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1] - csv:101220260 1752.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00266 Lsi09g00576 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00266 Lsi-Chr4:2738810 Lsi06g00031 Lsi-Chr6:334009 8.97E-30 dispersed
Lsi01g01264 Lsi-Chr1:10881148 Lsi04g00266 Lsi-Chr4:2738810 8.29E-11 transposed
Lsi02g00019 Lsi-Chr2:249830 Lsi04g00266 Lsi-Chr4:2738810 8.69E-40 transposed
Lsi03g00304 Lsi-Chr3:3702600 Lsi04g00266 Lsi-Chr4:2738810 3.82E-44 transposed
Lsi03g02083 Lsi-Chr3:32117915 Lsi04g00266 Lsi-Chr4:2738810 1.81E-40 transposed
Lsi08g01102 Lsi-Chr8:19685346 Lsi04g00266 Lsi-Chr4:2738810 4.02E-46 transposed
Lsi10g01209 Lsi-Chr10:16359028 Lsi04g00266 Lsi-Chr4:2738810 6.62E-11 transposed
Lsi04g00266 Lsi-Chr4:2738810 Lsi09g00576 Lsi-Chr9:6196172 1.66E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83554 PF00069 Pkinase 2.50E-46 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00266 Lsi_Chr04 FPKM 15.341326 14.088128 15.418201 16.729368 11.457365 11.495621 12.118265 22.153013 21.108412 26.867039