Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00267 ATGGGAAAGAAGATTGATGCACTGCTGGGAAGAAGCTTCAAGACCACAAGGTTCAAAGCTCTTGTTAATTTGGCCATATCTCGGCTCGCTGTTCTTGCAAACCAGCGCCAAGTCAGATCTTCCCAGGCTCGTTCTGATGTAGTTCAGTTGCTGCAGCTTGGCCACCAAGAGAGAGCCCTCTTTCGTGTGGAGCAAGTGATTAAGGACCAGAAACTGCTGGATGCGTATGCGATAATAGAGAGTTATTGTGAGGTTGTACTTGAAAGAATCAAGCTACTTGAACATGAGAGAGAATGTCCAGAAGAACTTAAGGAGGCAATTTCAGGTTTGATTTTTGCATCTTCTAGATGTGGGGATTTCCCAGAGCTTATAGAGATTCGTTCAGTTATTACCAGTCGTTTTGGGAAGGAGTTTACTGCTCGTGCTATTGAGTTACGCAACAATTGTGCTGTTAGCTCAATGATAGTACAGAAGCTGTCAGCTAGGCCACCAAGCTTGGAGATCAAATTGAAGTTACTTAAACAAATTGCATCTGAACATGGCATTACTTTGAAAGATTTGGAGGCTTATGAAGTTTCAACTGAGGTGAAAGTTGTGGCAGAAGAGAAGGATCAACCACATCACGAAAGCAAAGTGGAAGGTGTATTTCAGATTTTACCTGAAGAGATAGAGAAAGACAATCGGTATGCTGATTCGATGAGAGGAAGAAAGAAGTACAAAGACGTGGCAGACGCCGCTCAGGCAGCATTTGAGTCGGCGGCTTATGCAGCAGCTGCAGCAAGAGCTGCTGTGGAACTCTCTCAATCTAAATCACTTGATCATGATGACCTGAGTAGTCTGAGTCCAAAACCAAGAAAATCCACTGAAACTCTTGAATCCAAGAACACTGAGATAGAATTGGAATCACAAAACAAGGGAACACACAGTGGAAGTACGTCTATAGGAATGGAGGAGAGTGAAAATGGAACAGAATCAAAGCAGCCAGTGTCTTCTTCTAGTTCGGAAGCCGGGGATGCTAGTTTAAAGGAAAATGAGATTCCAATGGAAGCAATAATCAATCTGCTGGAGAAGGATTTGGTTTTTGACGAGAGTGATGTTGATGCTGGGAATGGAGAAAGCAGCAGTTCAACTCTTGAGGAGAGGAATTCGAGCTTCGAGTGTCGTGAGAAGATGGAATCAGAGTCTGCAGAGATCACAGCAAACAATGAGGAAGCTGATAACAAAAATACTGCACAAAATTTAAGCATAGGGAATAAGGCTGTTACAAGGACAGTAGATGTCCGTGGGCACTGA 1293 43.46 MGKKIDALLGRSFKTTRFKALVNLAISRLAVLANQRQVRSSQARSDVVQLLQLGHQERALFRVEQVIKDQKLLDAYAIIESYCEVVLERIKLLEHERECPEELKEAISGLIFASSRCGDFPELIEIRSVITSRFGKEFTARAIELRNNCAVSSMIVQKLSARPPSLEIKLKLLKQIASEHGITLKDLEAYEVSTEVKVVAEEKDQPHHESKVEGVFQILPEEIEKDNRYADSMRGRKKYKDVADAAQAAFESAAYAAAAARAAVELSQSKSLDHDDLSSLSPKPRKSTETLESKNTEIELESQNKGTHSGSTSIGMEESENGTESKQPVSSSSSEAGDASLKENEIPMEAIINLLEKDLVFDESDVDAGNGESSSSTLEERNSSFECREKMESESAEITANNEEADNKNTAQNLSIGNKAVTRTVDVRGH 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2752544 2754263 + Lsi04G002670.1 Lsi04g00267 660316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00267 430 MobiDBLite consensus disorder prediction 382 397 - -
Lsi04g00267 430 MobiDBLite consensus disorder prediction 398 420 - -
Lsi04g00267 430 Gene3D - 6 192 IPR042277 -
Lsi04g00267 430 Pfam Regulator of Vps4 activity in the MVB pathway 19 182 IPR005061 GO:0015031
Lsi04g00267 430 Coils Coil 388 408 - -
Lsi04g00267 430 PANTHER IST1 FAMILY MEMBER 8 406 IPR005061 GO:0015031
Lsi04g00267 430 MobiDBLite consensus disorder prediction 268 344 - -
Lsi04g00267 430 MobiDBLite consensus disorder prediction 268 301 - -
Lsi04g00267 430 MobiDBLite consensus disorder prediction 365 430 - -
Lsi04g00267 430 MobiDBLite consensus disorder prediction 302 339 - -
Lsi04g00267 430 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 8 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00267 - - - bhj:120082250 668.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00267 Lsi-Chr4:2752544 Lsi08g00399 Lsi-Chr8:11030842 2.11E-82 dispersed
Lsi08g00398 Lsi-Chr8:10993630 Lsi04g00267 Lsi-Chr4:2752544 2.21E-11 dispersed
Lsi09g01032 Lsi-Chr9:15002536 Lsi04g00267 Lsi-Chr4:2752544 4.22E-22 dispersed
Lsi04g00267 Lsi-Chr4:2752544 Lsi11g01540 Lsi-Chr11:23735891 4.83E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g289 . . . . . Bpe10g00940 . Bma15g00084 . Cmo18g01044 . Cma18g01031 . Car18g00954 Sed06g1874 Cpe09g00289 Cpe01g01779 Bhi07g01341 Tan04g0880 Cmetu10g0761 Lac13g0479 Hepe01g1205 . . Cla05g02312 . Cec05g2507 Cco05g2549 Clacu05g2480 Cmu05g2341 Cre05g2458 Cone13ag0839 . . Cone9ag0468 Lsi04g00267 Csa05g02599 Chy10g01134 Cme10g00273 Blo06g00966 . . . Bpe11g01695 Bpe02g02080 . . . Cmo04g02140 . Cma04g02037 . Car04g01983 . . . . . . . . . . . . . . . . . . . Chy09g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012784 1 2 0 0 1 0 2 0 0 1 1 1 2 1 1 2 1 0 1 0 1 1 1 1 1 1 1 1 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00267 Lsi_Chr04 FPKM 0.0 0.0 0.129672 0.0 0.0 0.0 0.0 0.0 0.0 0.0