Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00279 TTCGGAGTGATTCTGTCCAAATTGTTCTGTTTCTCAGCTCTTCTTCTCTCTCAAATCTGCTCCACTTCCTCAAATTTTCAATTTCTGATACTTGTTTTCTGTAAAGAAGCCCTAAAAAGTGATCCTTTGATCCTCTCTTCCTATCGCTTTCTTACCCACTTTTCACGTTCTTGTCAACCTCATTATGATTCACTCCAAAAGCTTCCAATTCTCAAACCCATTTCAAAACAATGCTCCATAGTTGTTTCTCCATTCGTAATGGGGGACTCGGGTAGCGTCTCTTCTTCTTCCTTCGATTCCGCCTCCGTCGTTACCGCCGATCAGGTCCAGAATGCAGTTCAGGGTCGTATGAGTGGCGACGGAGGCCAAGCGCTGTCGGATGAATCGTCACGTTCCTGGCGAGATGTTTTCTGGTCCTTCGTGTTTATGATACATTTGATCAGTGTAGGATTTGTGCTTGTGATTCTGGGGCTTAATAGGTTCAAGAAGAGCAATAGGTTACAAATCGATAAATACACCAATACAATCATGGAGAATCGGGTTGGATTAACAGAGGATTACTGGCCGCTTTACGCTTTGGCAGGCGGAGTGGGAAGCTTACTTGGATGGACTTGGTTGTTCTTGCTTGGTTCTTTTGCAAATCATGTAATGAAGATTTCTGTGCATATTTTGACTACATATCTTGCTGTGATAAGTGTTTTGTGCTTTTGGGGCCAGCTATTTTTCTGGGGTGTAGCATTTTCAATTGGTGCGGGGTTGCAGTTCCTATATGTTATATCAGTTATAGACAGACTACCATTTACACTTCTAGTGTTGCAAAAGGCTGTAAAGATGGTATCTGGGCTTCCTGAAGTTATTAGAGTTGCACATGCTTTCATGATTGTCATGCTTTTGTGTATGGGAATTTGGTCTTTTGGAGTAGCTGGTATTGTGGCATCGAGTATGGGTGACGGTGGACGCTGGTGGCTACTTGTGGTGAGCTGGCAAGTTTTCTCCATAAGCTTATTTTGGGCTGGTGCTGTTTTCTGTAATACTTTACATGTTATAGTTTCTGGAATGGTGTTTCTAGTCCTAATCCATGGCGGCAGAGAGTCGTCATCTATGCCATCAAAGTCGTTGGTGAAGGCTTCACGATATGCTGTGACAACATCTTTTGGTAGCATTTGCTATGGATCACTTTTTACAGCTGCCATTCGAACACTGCGGTGGGAGATCAGGGGAATCCGATCAAAGATTGGCAAGAACGAGTGTCTGCTTTGCTGTGTTGATTTTGTGTTTCATCTTGTTGAGACTCTTGTTCGTTTCTTTAACAAATATGCCTATGTCCAGATAGCAGTTTATGGTAAAAGCTTCAACCGTTCGGCCAGGGATGCATGGGAGTTATTCCAGTCAACCGGAGTCGAAGCTCTCATTGCTTACGATTGTTCAGGTGCTGTTCTTCTGATGAGCACCATCATGGGCGGGCTCACTGCTGGAACGTGCTCAGGTATTTGGACATGGATCAAGTGGAAGGATAAGGTGTCAATGGTGGCATGTACTGCAACACTGATGGGAATGGTCCTGGTTGGCCTTGCAATAGTGGTTGTGGAAAGTGCTGTTACGTCCATATACATCTGTTATGCAGAAAATCCATTGTTGATTCAGAAATGGGATGCTGAATTCTTCAACCAGATTTCGGAGATGCTTCACCAGCGCCTTCAGCACCGGAGTGCTCGAGCAAGGGAAGTGTTAACGGAATATCAGTTCGACAGCCGCAGAGAAGACCTGGTACAGGCATGA 1779 44.41 FGVILSKLFCFSALLLSQICSTSSNFQFLILVFCKEALKSDPLILSSYRFLTHFSRSCQPHYDSLQKLPILKPISKQCSIVVSPFVMGDSGSVSSSSFDSASVVTADQVQNAVQGRMSGDGGQALSDESSRSWRDVFWSFVFMIHLISVGFVLVILGLNRFKKSNRLQIDKYTNTIMENRVGLTEDYWPLYALAGGVGSLLGWTWLFLLGSFANHVMKISVHILTTYLAVISVLCFWGQLFFWGVAFSIGAGLQFLYVISVIDRLPFTLLVLQKAVKMVSGLPEVIRVAHAFMIVMLLCMGIWSFGVAGIVASSMGDGGRWWLLVVSWQVFSISLFWAGAVFCNTLHVIVSGMVFLVLIHGGRESSSMPSKSLVKASRYAVTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGKNECLLCCVDFVFHLVETLVRFFNKYAYVQIAVYGKSFNRSARDAWELFQSTGVEALIAYDCSGAVLLMSTIMGGLTAGTCSGIWTWIKWKDKVSMVACTATLMGMVLVGLAIVVVESAVTSIYICYAENPLLIQKWDAEFFNQISEMLHQRLQHRSARAREVLTEYQFDSRREDLVQA 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2805241 2808053 - Lsi04G002790.1 Lsi04g00279 660328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00279 592 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 108 579 - -
Lsi04g00279 592 Pfam Plasma-membrane choline transporter 246 544 IPR007603 GO:0022857|GO:0055085
Lsi04g00279 592 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 108 579 IPR007603 GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00279 - - - csv:101222615 952.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01189 Lsi-Chr3:22330992 Lsi04g00279 Lsi-Chr4:2805241 4.84E-28 dispersed
Lsi04g00279 Lsi-Chr4:2805241 Lsi10g00486 Lsi-Chr10:6990704 1.08E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g278 . . . . . Bpe10g00944 . Bma15g00080 . Cmo18g01051 . . . Car18g00960 Sed07g2065 Cpe09g00283 . Bhi07g01356 Tan04g0890 Cmetu10g0317 Lac13g0471 Hepe01g1213 . . Cla05g02321 Cam05g2493 Cec05g2517 Cco05g2559 Clacu05g2487 Cmu05g2350 Cre05g2466 . . . . Lsi04g00279 Csa05g02589 Chy10g01125 Cme10g00281 Blo06g00968 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010781 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00279 Lsi_Chr04 FPKM 3.904834 4.763214 1.330629 1.470554 1.515189 1.009423 1.07618 6.198195 6.453588 5.534616