Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00283 ATGGCAGAGAAGCAGTTGATAGTGGTCGTTGAAGGTACCGCAGCCATGGGTCCCTTCTGGCAAACTGTCGTATCGGATTACATTGAAAAGATCGTCAGAAACCTCCAACCTCTAATGTTGAGTTCTCTCTGGTCACGTTTCATACTCATGGATCATATTGTGATCTCTGACACCGAAGAAGTACCAGATATATATGCATATGCACACACACACATTGTTTCAGGAACGAAACTAGTCACTTTCAGTAGACAAAGTGTCATGTGGAATGTTGGATGTCTAGTACAGCGGACTGGGTGGACAAGAGATGTTGATATTTTTATACAGTGGCTTTCAGCTATTCCCTTTTCTGGTGGTGGTTTCAGTGACGCTGCAATAGCTGAAGGGCTAGCTGAAGCACTCATGATGTTCCCAACCCAGCCAAATGGTGGCCAGAATCAACAAACTATGGATATTCAGAAGCACTGTATTCTCGTTGCTGCAAGTAATCCTTATCCCCTGCCAACGCCAGTATATAGACCAGCAGTGCAAAATTTGGAGCAACATGACAATGTTGAACCAGGGAGTTCTCAGTCATATGCTGAAACAGTTGCTAAATCATTTTCTCAGTGCTTCATATCTCTGTCAGTTATTTGTCCGAAACAGCTTCCAAAGCTCAGAGCAATTTACACTGCTGGAAAGCGCAACCCCCGGGCAGCAGATCCACCTATTGATAATGTTAAAACCCCCTCATACCTTGTTTTGATCTCTGAAAATTTTGTGGAGGCCCGTGCAGCCTTAAGTCGTCCTGGAATTAACAGTTTACCTGCAAACCAGAGTCCTGTGAAAATGGACATATCTCCTGTTGTGCCTGTTACTGGACCACCTCCTACCACTACTCCATCAGTAAATGGACCTATCATTAACCGGCAGCCAGTGTCTGTTGCTAATATCCCTCCTGCTACTGTGAAAGTTGAACCAAATACTGTTACACCTATGACAAATGGATCTGGATATCCACCACATATGCCATCGGTTGTTCGTGCAGCTTCACAGGGAGTCCCAAGCTTGCAGACTTCTTCACCACTTTCTTCTCAGGAGATGATCACAAATAATGAGAACACACAAGATCTTAAACCTCTAGTTAATGGTGTTCCACAGCCTGTACGACCCGTGGGTCCTGCTAATGTTAGCATTCTGAATAATATTTCTCAAGCACGAGTGATGAGCACTGCTGCTTTAAATGGTGGAACTTCCATAGGACTCCCGTCTATGGGTCAAACCCCAATGGCCATGCATGTATCCAATATGATATCCAGCGGAATGGGATCATCTGTGCCTGCTGCACAAAATGTATTTTCATCTGGTCAATCTGGTATGACATCAATAAATGGGTCTTCAACCCTTACACAGGTTGCACCGAACTCAGGTATAAGCTCACTTACTTCAGGAAATAACAATATTTCTGGAAATTCAAATATTGCCACTTCACAAGCAGTAGGAAATCTCCAAGGTGGTGTTAGTGTGAGTCAATCTGTACCTGGGATTAGCCAAGGAAATCTTTCAGGGACACAAGTGGTACAAAGTGGAATTGGTGTGAGCCAAAATGTTATGAGCAACCTAACCCAACCTGGTGTTTCTTCTGGAAATGGCACGATGATTCCTACTCCAGGAATGCCTCAACAAGTGCAAAATGGGATGCATTCACTTGGTGTGAACAATGCAGCAGCTAACATGCCATTACCACAGCATTCAGCAGGTGCTTTGCAACAAGCACAATCCAAATACGTGAAATTTTGGGAGGGAAATCTATCTGGTCAGAGACAAGGCCAGCCTGTTTTTATTACCAGAATGGAAGGTTACAGGAGTGCTTCAGCTTCTGATAAGCTTGCAGCAAACTGGCCGCAGACAATGCAAATAGTTCGGCTTATCTCACAAGATCACATGAATAACAAGCAATATATTGGAAAAGCTGATTTTCTTGTTTTCCGAGCTATGAATCAGCATGGATTTCTTGGCCAGCTTCAAGAAAAGAAACTTTTAATTGATGTGGAAAGGGCTGAGTGGAGAATTTTCTTTGCTTTGTCTTGTGGGTTACAGGGGGAACAATGGGAGAATGAAGAGAGTAGTCAACTTAGGGAGATCCATTCTCAAATCTCATCATCCAAAAGGTTCCTTGCAAGGCTAAGACTTTACTTTGTGCTTGCAGCATTTTCTGTTCCTTTGGATAATGTGCAGTCATCCAGTTACCATCCCAGACTTTACTGCTATCTGTTTCTGATAAAGCTTGCCGCTTGA 2274 43.54 MAEKQLIVVVEGTAAMGPFWQTVVSDYIEKIVRNLQPLMLSSLWSRFILMDHIVISDTEEVPDIYAYAHTHIVSGTKLVTFSRQSVMWNVGCLVQRTGWTRDVDIFIQWLSAIPFSGGGFSDAAIAEGLAEALMMFPTQPNGGQNQQTMDIQKHCILVAASNPYPLPTPVYRPAVQNLEQHDNVEPGSSQSYAETVAKSFSQCFISLSVICPKQLPKLRAIYTAGKRNPRAADPPIDNVKTPSYLVLISENFVEARAALSRPGINSLPANQSPVKMDISPVVPVTGPPPTTTPSVNGPIINRQPVSVANIPPATVKVEPNTVTPMTNGSGYPPHMPSVVRAASQGVPSLQTSSPLSSQEMITNNENTQDLKPLVNGVPQPVRPVGPANVSILNNISQARVMSTAALNGGTSIGLPSMGQTPMAMHVSNMISSGMGSSVPAAQNVFSSGQSGMTSINGSSTLTQVAPNSGISSLTSGNNNISGNSNIATSQAVGNLQGGVSVSQSVPGISQGNLSGTQVVQSGIGVSQNVMSNLTQPGVSSGNGTMIPTPGMPQQVQNGMHSLGVNNAAANMPLPQHSAGALQQAQSKYVKFWEGNLSGQRQGQPVFITRMEGYRSASASDKLAANWPQTMQIVRLISQDHMNNKQYIGKADFLVFRAMNQHGFLGQLQEKKLLIDVERAEWRIFFALSCGLQGEQWENEESSQLREIHSQISSSKRFLARLRLYFVLAAFSVPLDNVQSSSYHPRLYCYLFLIKLAA 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2829662 2842532 - Lsi04G002830.1 Lsi04g00283 660332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00283 757 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 3 35 IPR045105 -
Lsi04g00283 757 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 85 674 IPR045105 -
Lsi04g00283 757 Pfam Mediator complex subunit 25 von Willebrand factor type A 77 250 IPR021419 -
Lsi04g00283 757 PANTHER BNACNNG04590D PROTEIN 3 35 - -
Lsi04g00283 757 PANTHER BNACNNG04590D PROTEIN 85 674 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00283 K15168 MED25; mediator of RNA polymerase II transcription subunit 25 - csv:101203057 1117.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g273 . Blo16g01055 . Bda11g01138 Bpe13g01334 . . . . Cmo18g01056 . Cma18g01038 . Car18g00964 . Cpe09g00279 Cpe01g01352 Bhi07g01363 . . Lac13g0465 . . . . . . . . . . . . Cone6ag0462 Cone9ag0474 Lsi04g00283 Csa05g02586 Chy10g01121 Cme10g00285 . . . Bda11g01138 . . . Bma06g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007530 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00283 Lsi_Chr04 FPKM 0.483143 0.0 0.0 0.0 0.593621 0.471938 0.0 0.102149 0.068716 0.176807